Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056G03.3 |
| Conread position: | 725-870 |
| Cow position: | chrX:19161836-19161980 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 71, 27 |
| Conread position: | 751-922 |
| Cow position: | chrX:41199487-41199319 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 111, 28 |
| Conread position: | 752-931 |
| Cow position: | chrX:42246910-42247099 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 45, 142 |
| Conread position: | 758-930 |
| Cow position: | chrX:26979529-26979707 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 104, 69 |
| Conread position: | 764-931 |
| Cow position: | chrX:4632596-4632774 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 767-931 |
| Cow position: | chrX:35885478-35885644 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 768-931 |
| Cow position: | chrX:26205206-26205365 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 94, 32 |
| Conread position: | 768-931 |
| Cow position: | chrX:44995751-44995582 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 90, 6 |
| Conread position: | 769-931 |
| Cow position: | chrX:41941878-41941706 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 85 |
| Conread position: | 772-931 |
| Cow position: | chrX:13924110-13923947 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 19, 116 |
| Conread position: | 775-929 |
| Cow position: | chrX:8642290-8642129 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 780-931 |
| Cow position: | chrX:27415347-27415497 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 60 |
| Conread position: | 780-931 |
| Cow position: | chrX:33466863-33466707 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 780-931 |
| Cow position: | chrX:35409992-35409835 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 80, 111 |
| Conread position: | 780-931 |
| Cow position: | chrX:44055043-44054885 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 781-878 |
| Cow position: | chrX:29723990-29723891 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 84 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 781-918 |
| Cow position: | chrX:11454414-11454277 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 15, 103 |
| Conread position: | 781-921 |
| Cow position: | chrX:42165380-42165521 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 81, 104 |
| Conread position: | 781-925 |
| Cow position: | chrX:1996212-1996363 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 81, 110 |
| Conread position: | 781-925 |
| Cow position: | chrX:37717963-37717810 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 13, 112 |
| Conread position: | 781-931 |
| Cow position: | chrX:13122183-13122021 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 781-931 |
| Cow position: | chrX:26720451-26720599 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 81, 39 |
| Conread position: | 781-931 |
| Cow position: | chrX:41011129-41010981 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 81, 45 |
| Conread position: | 781-932 |
| Cow position: | chrX:19356703-19356545 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 89, 110 |
| Conread position: | 781-937 |
| Cow position: | chrX:25207622-25207780 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 81, 105 |
| Conread position: | 781-941 |
| Cow position: | chrX:17929237-17929074 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 81, 106 |
| Conread position: | 781-960 |
| Cow position: | chrX:1938252-1938064 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 91, 182 |
| Conread position: | 781-964 |
| Cow position: | chrX:4268831-4269018 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 782-925 |
| Cow position: | chrX:38964334-38964197 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 782-931 |
| Cow position: | chrX:51665-51818 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 104, 14 |
| Conread position: | 782-931 |
| Cow position: | chrX:16763691-16763842 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 10, 104 |
| Conread position: | 783-925 |
| Cow position: | chrX:37751874-37752017 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 93, 68 |
| Conread position: | 783-931 |
| Cow position: | chrX:23335738-23335893 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 783-931 |
| Cow position: | chrX:25035145-25035299 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 103, 20 |
| Conread position: | 784-864 |
| Cow position: | chrX:15545415-15545495 (view UCSC Genome Browser custom track) |
| Alignm length: | 81 |
| Alignm identity: | 73 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 784-929 |
| Cow position: | chrX:20339659-20339809 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 88, 40 |
| Conread position: | 784-931 |
| Cow position: | chrX:46910044-46909898 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 84, 35 |
| Conread position: | 784-932 |
| Cow position: | chrX:12290954-12290801 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 78, 105 |
| Conread position: | 784-973 |
| Cow position: | chrX:597242-597436 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 88, 140 |
| Conread position: | 785-931 |
| Cow position: | chrX:27446917-27446769 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 68, 11 |
| Conread position: | 786-930 |
| Cow position: | chrX:33654609-33654760 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 786-931 |
| Cow position: | chrX:44123485-44123338 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 16, 62 |
| Conread position: | 786-978 |
| Cow position: | chrX:42449778-42449974 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 11, 106 |
| Conread position: | 787-930 |
| Cow position: | chrX:12095538-12095688 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 104 |
| Conread position: | 787-931 |
| Cow position: | chrX:35392072-35392215 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 80, 39 |
| Conread position: | 789-894 |
| Cow position: | chrX:28846662-28846767 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 73, 14 |
| Conread position: | 789-931 |
| Cow position: | chrX:1101782-1101640 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 7, 92 |
| Conread position: | 789-931 |
| Cow position: | chrX:9425531-9425670 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 789-931 |
| Cow position: | chrX:27261421-27261275 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 71, 32 |
| Conread position: | 789-931 |
| Cow position: | chrX:36283571-36283423 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 99, 115 |
| Conread position: | 791-931 |
| Cow position: | chrX:3806908-3806765 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 7, 96 |
| Conread position: | 791-931 |
| Cow position: | chrX:40337140-40336993 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
Show alignments to all cow chromosomes.