Cow genome map

Conread name: Ss1.1-Pig4-TMW8056H21.3

Conread position: 166-338
Cow position: chr1:51256884-51257053 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 112, 20

Conread position: 185-350
Cow position: chr1:96928914-96929085 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 187-357
Cow position: chr1:38692549-38692720 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 32, 130

Conread position: 187-359
Cow position: chr1:78791420-78791249 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 31, 10

Conread position: 188-359
Cow position: chr1:72731924-72732096 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 15, 31

Conread position: 188-364
Cow position: chr1:90423197-90423022 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 33, 9

Conread position: 191-342
Cow position: chr1:31190220-31190067 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 191-357
Cow position: chr1:53039813-53039648 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 22, 87

Conread position: 191-359
Cow position: chr1:80764647-80764480 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 38, 0

Conread position: 192-315
Cow position: chr1:56408508-56408630 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 105, 0

Conread position: 192-328
Cow position: chr1:38525481-38525616 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 25, 65

Conread position: 192-330
Cow position: chr1:5162158-5162018 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 27, 5

Conread position: 192-337
Cow position: chr1:31871316-31871462 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 27, 5

Conread position: 192-338
Cow position: chr1:32244510-32244361 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 192-338
Cow position: chr1:90413271-90413417 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 26, 5

Conread position: 192-339
Cow position: chr1:57264104-57263957 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 88, 5

Conread position: 192-343
Cow position: chr1:10719591-10719439 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 29, 0

Conread position: 192-350
Cow position: chr1:46839492-46839651 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 34, 5

Conread position: 192-351
Cow position: chr1:101771796-101771948 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 127, 56

Conread position: 192-352
Cow position: chr1:42555155-42555314 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 73, 5

Conread position: 192-357
Cow position: chr1:79278555-79278394 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 119
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 192-359
Cow position: chr1:23099790-23099958 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 5

Conread position: 192-359
Cow position: chr1:44746757-44746918 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 192-359
Cow position: chr1:73653751-73653587 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 13, 58

Conread position: 192-359
Cow position: chr1:74947231-74947062 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 136
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 75, 5

Conread position: 192-359
Cow position: chr1:81301202-81301036 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 27, 5

Conread position: 192-359
Cow position: chr1:82378679-82378847 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 121
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 134, 104

Conread position: 192-361
Cow position: chr1:7142958-7142793 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 27, 125

Conread position: 192-361
Cow position: chr1:31390701-31390533 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 13, 25

Conread position: 192-361
Cow position: chr1:93110731-93110560 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 135
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 27, 161

Conread position: 193-352
Cow position: chr1:24407003-24406849 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 10, 78

Conread position: 194-335
Cow position: chr1:87148755-87148896 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 88, 39

Conread position: 197-351
Cow position: chr1:56477483-56477639 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 113
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 85, 0

Conread position: 197-352
Cow position: chr1:49131221-49131063 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 22, 133

Conread position: 197-352
Cow position: chr1:63504229-63504382 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 21, 32

Conread position: 197-357
Cow position: chr1:26688579-26688418 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 84, 124

Conread position: 197-359
Cow position: chr1:8869768-8869604 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 197-359
Cow position: chr1:71136044-71136208 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 22, 0

Conread position: 200-343
Cow position: chr1:70389324-70389469 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 22, 0

Conread position: 214-350
Cow position: chr1:60281283-60281419 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 67, 42

Conread position: 214-352
Cow position: chr1:48769716-48769850 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 214-357
Cow position: chr1:56635008-56635151 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 71, 81

Conread position: 215-357
Cow position: chr1:4032542-4032685 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 105
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 70, 0

Conread position: 217-359
Cow position: chr1:15902407-15902549 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 52, 82

Conread position: 218-338
Cow position: chr1:765650-765530 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 218-347
Cow position: chr1:64302331-64302201 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 218-349
Cow position: chr1:48083641-48083774 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 218-350
Cow position: chr1:75347538-75347671 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 112
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 65, 0

Conread position: 218-350
Cow position: chr1:85596129-85595997 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 62, 45

Conread position: 218-351
Cow position: chr1:21934259-21934126 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 111
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 66, 74

Conread position: 218-351
Cow position: chr1:43703324-43703456 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 56, 0

Conread position: 218-351
Cow position: chr1:50045717-50045848 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 218-351
Cow position: chr1:52052804-52052670 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 218-351
Cow position: chr1:99807804-99807669 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 112
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 64, 0

Conread position: 218-356
Cow position: chr1:89443564-89443426 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 114
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 64, 7

Conread position: 218-357
Cow position: chr1:73196317-73196178 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 218-358
Cow position: chr1:30441873-30442010 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 26, 0

Conread position: 218-359
Cow position: chr1:2997863-2998003 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 101, 97

Conread position: 218-359
Cow position: chr1:15691250-15691390 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 104
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 86, 0

Conread position: 218-359
Cow position: chr1:28678438-28678578 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 67, 6

Conread position: 218-359
Cow position: chr1:29975686-29975544 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 65, 0

Conread position: 218-359
Cow position: chr1:30066534-30066674 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 64, 80

Conread position: 218-359
Cow position: chr1:50345459-50345601 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 69, 0

Conread position: 218-359
Cow position: chr1:89548107-89548244 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 27, 99

Conread position: 218-361
Cow position: chr1:63038155-63038301 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 65, 0

Conread position: 218-363
Cow position: chr1:41735707-41735560 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 58, 0

Conread position: 219-352
Cow position: chr1:64189415-64189549 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 63, 97

Conread position: 219-359
Cow position: chr1:96192745-96192611 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 66, 42

Conread position: 220-347
Cow position: chr1:35170257-35170380 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 67, 25

Conread position: 220-358
Cow position: chr1:32341290-32341155 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 63, 46

Conread position: 222-357
Cow position: chr1:10673851-10673986 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 19

Conread position: 223-347
Cow position: chr1:81913233-81913108 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 224-343
Cow position: chr1:69415790-69415670 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 100
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 58, 0

Conread position: 224-349
Cow position: chr1:15028672-15028798 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 224-359
Cow position: chr1:76096360-76096494 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 60, 8

Conread position: 225-338
Cow position: chr1:57782928-57783042 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 96
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 57, 0

Conread position: 225-359
Cow position: chr1:58825465-58825596 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 112
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 60, 18

Conread position: 228-359
Cow position: chr1:99321421-99321291 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 52, 21

Conread position: 231-350
Cow position: chr1:2765341-2765460 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 92
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 239-357
Cow position: chr1:54216953-54217070 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 241-359
Cow position: chr1:5229028-5228910 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 40, 31

Conread position: 243-347
Cow position: chr1:93577348-93577243 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 89
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 243-361
Cow position: chr1:39121898-39121780 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 39, 108

Conread position: 250-359
Cow position: chr1:20581889-20581999 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 265-359
Cow position: chr1:54289231-54289137 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.