Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056H21.3 |
| Conread position: | 168-357 |
| Cow position: | chr11:27764990-27765183 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 8, 20 |
| Conread position: | 170-352 |
| Cow position: | chr11:16540706-16540887 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 33, 46 |
| Conread position: | 174-350 |
| Cow position: | chr11:16262178-16262002 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 111, 10 |
| Conread position: | 183-347 |
| Cow position: | chr11:9874176-9874339 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 78 |
| Conread position: | 186-352 |
| Cow position: | chr11:75965790-75965627 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 33, 90 |
| Conread position: | 187-359 |
| Cow position: | chr11:41271995-41272169 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 27, 133 |
| Conread position: | 189-351 |
| Cow position: | chr11:9368686-9368853 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 191-358 |
| Cow position: | chr11:38845393-38845231 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 192-338 |
| Cow position: | chr11:7333855-7333709 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 27, 13 |
| Conread position: | 192-338 |
| Cow position: | chr11:12950080-12949932 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 192-338 |
| Cow position: | chr11:19238289-19238145 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 192-350 |
| Cow position: | chr11:24585045-24585204 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 192-351 |
| Cow position: | chr11:28395337-28395499 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 13, 25 |
| Conread position: | 192-352 |
| Cow position: | chr11:16000794-16000950 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 5 |
| Conread position: | 192-352 |
| Cow position: | chr11:32439085-32438926 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 27, 5 |
| Conread position: | 192-358 |
| Cow position: | chr11:40486069-40485904 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 94, 5 |
| Conread position: | 192-358 |
| Cow position: | chr11:42232472-42232637 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 27, 5 |
| Conread position: | 192-359 |
| Cow position: | chr11:11752651-11752485 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 27, 5 |
| Conread position: | 192-359 |
| Cow position: | chr11:20491438-20491601 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 27, 5 |
| Conread position: | 192-359 |
| Cow position: | chr11:50951421-50951589 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 27, 5 |
| Conread position: | 192-359 |
| Cow position: | chr11:62574137-62573977 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 25, 5 |
| Conread position: | 192-359 |
| Cow position: | chr11:64904864-64905030 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 125, 95 |
| Conread position: | 196-357 |
| Cow position: | chr11:19259642-19259483 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 45, 25 |
| Conread position: | 196-359 |
| Cow position: | chr11:14308507-14308671 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 197-359 |
| Cow position: | chr11:28691888-28691722 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 197-359 |
| Cow position: | chr11:43646540-43646380 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 20, 43 |
| Conread position: | 197-359 |
| Cow position: | chr11:52832844-52832689 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 197-363 |
| Cow position: | chr11:18698749-18698915 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 102, 83 |
| Conread position: | 199-342 |
| Cow position: | chr11:8846624-8846478 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 202-333 |
| Cow position: | chr11:55821829-55821698 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 97 |
| Conread position: | 215-341 |
| Cow position: | chr11:51044041-51043914 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 217-338 |
| Cow position: | chr11:43526236-43526115 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 217-357 |
| Cow position: | chr11:2811837-2811700 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 217-357 |
| Cow position: | chr11:84795859-84795719 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 10, 33 |
| Conread position: | 218-326 |
| Cow position: | chr11:35668821-35668712 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 218-338 |
| Cow position: | chr11:8828735-8828617 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 218-338 |
| Cow position: | chr11:30147407-30147528 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 91, 98 |
| Conread position: | 218-338 |
| Cow position: | chr11:43644208-43644089 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 218-348 |
| Cow position: | chr11:77683060-77683190 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 65, 100 |
| Conread position: | 218-349 |
| Cow position: | chr11:52690629-52690498 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 218-351 |
| Cow position: | chr11:11125555-11125687 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 218-352 |
| Cow position: | chr11:58588240-58588371 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 218-357 |
| Cow position: | chr11:52983569-52983705 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 218-357 |
| Cow position: | chr11:53778508-53778646 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 218-358 |
| Cow position: | chr11:67871712-67871573 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 64, 38 |
| Conread position: | 218-359 |
| Cow position: | chr11:21136705-21136846 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 66, 111 |
| Conread position: | 218-359 |
| Cow position: | chr11:69402358-69402216 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 218-361 |
| Cow position: | chr11:18144924-18144783 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 66, 13 |
| Conread position: | 219-348 |
| Cow position: | chr11:37160680-37160810 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 219-358 |
| Cow position: | chr11:9083369-9083508 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 79 |
| Conread position: | 219-359 |
| Cow position: | chr11:36701647-36701784 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 219-359 |
| Cow position: | chr11:65444952-65444811 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 220-358 |
| Cow position: | chr11:59366184-59366044 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 225-357 |
| Cow position: | chr11:42359012-42359144 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 58, 49 |
| Conread position: | 225-359 |
| Cow position: | chr11:27681398-27681533 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 226-350 |
| Cow position: | chr11:26468047-26468171 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 56, 72 |
| Conread position: | 226-350 |
| Cow position: | chr11:31506745-31506872 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 226-359 |
| Cow position: | chr11:53313671-53313540 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 232-352 |
| Cow position: | chr11:34946166-34946046 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 239-359 |
| Cow position: | chr11:9055872-9055993 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 243-352 |
| Cow position: | chr11:84890803-84890692 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.