Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056H21.3 |
| Conread position: | 189-359 |
| Cow position: | chr17:37778696-37778529 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 192-308 |
| Cow position: | chr17:20608471-20608588 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 27, 5 |
| Conread position: | 192-335 |
| Cow position: | chr17:10271420-10271562 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 78 |
| Conread position: | 192-338 |
| Cow position: | chr17:25590310-25590165 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 26, 90 |
| Conread position: | 192-339 |
| Cow position: | chr17:18824716-18824861 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 27, 98 |
| Conread position: | 192-342 |
| Cow position: | chr17:35212291-35212443 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 192-343 |
| Cow position: | chr17:11344143-11344292 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 90, 5 |
| Conread position: | 192-352 |
| Cow position: | chr17:8279784-8279624 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 33, 112 |
| Conread position: | 192-357 |
| Cow position: | chr17:10459012-10458844 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 136, 82 |
| Conread position: | 192-357 |
| Cow position: | chr17:27257306-27257139 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 27, 5 |
| Conread position: | 192-359 |
| Cow position: | chr17:23803383-23803550 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 88 |
| Conread position: | 197-351 |
| Cow position: | chr17:20216095-20216250 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 22, 96 |
| Conread position: | 197-359 |
| Cow position: | chr17:11171722-11171883 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 84 |
| Conread position: | 210-357 |
| Cow position: | chr17:25126293-25126438 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 71 |
| Conread position: | 214-343 |
| Cow position: | chr17:23879876-23879747 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 67, 25 |
| Conread position: | 214-359 |
| Cow position: | chr17:7205359-7205510 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 143 |
| Conread position: | 215-351 |
| Cow position: | chr17:21973185-21973048 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 215-357 |
| Cow position: | chr17:20993091-20992954 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 217-338 |
| Cow position: | chr17:10424031-10424151 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 74, 31 |
| Conread position: | 217-338 |
| Cow position: | chr17:33903971-33903849 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 217-352 |
| Cow position: | chr17:18568981-18568850 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 217-357 |
| Cow position: | chr17:2270947-2271088 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 44, 37 |
| Conread position: | 217-357 |
| Cow position: | chr17:18860772-18860633 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 218-338 |
| Cow position: | chr17:25707910-25708029 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 218-351 |
| Cow position: | chr17:1469327-1469461 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 218-351 |
| Cow position: | chr17:19891573-19891706 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 66, 27 |
| Conread position: | 218-351 |
| Cow position: | chr17:38363035-38362901 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 99, 56 |
| Conread position: | 218-352 |
| Cow position: | chr17:12059143-12059010 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 218-359 |
| Cow position: | chr17:32457617-32457479 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 65, 108 |
| Conread position: | 218-363 |
| Cow position: | chr17:13716087-13715940 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 219-352 |
| Cow position: | chr17:923830-923962 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 219-352 |
| Cow position: | chr17:7654504-7654369 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 219-359 |
| Cow position: | chr17:36400050-36400192 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 104 |
| Conread position: | 219-384 |
| Cow position: | chr17:7614430-7614263 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 224-338 |
| Cow position: | chr17:5296900-5296784 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 224-338 |
| Cow position: | chr17:5986115-5985999 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 225-353 |
| Cow position: | chr17:36217223-36217098 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 225-359 |
| Cow position: | chr17:24880699-24880830 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 57, 92 |
| Conread position: | 226-359 |
| Cow position: | chr17:13601017-13600890 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 234-362 |
| Cow position: | chr17:8293816-8293690 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 120, 0 |
Show alignments to all cow chromosomes.