Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056H21.3 |
| Conread position: | 159-359 |
| Cow position: | chr18:21176006-21176203 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 66, 46 |
| Conread position: | 181-359 |
| Cow position: | chr18:32908894-32909067 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 134, 16 |
| Conread position: | 186-336 |
| Cow position: | chr18:34325108-34324957 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 192-352 |
| Cow position: | chr18:36478051-36478212 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 5 |
| Conread position: | 192-357 |
| Cow position: | chr18:24855992-24855829 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 192-359 |
| Cow position: | chr18:16726500-16726665 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 192-359 |
| Cow position: | chr18:22411763-22411595 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 192-359 |
| Cow position: | chr18:32773732-32773895 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 192-361 |
| Cow position: | chr18:4515880-4516048 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 193-357 |
| Cow position: | chr18:40759059-40759221 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 193-359 |
| Cow position: | chr18:1495162-1495320 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 193-359 |
| Cow position: | chr18:23715031-23714867 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 89, 21 |
| Conread position: | 198-359 |
| Cow position: | chr18:21706322-21706167 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 21, 53 |
| Conread position: | 198-359 |
| Cow position: | chr18:51500216-51500057 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 88, 61 |
| Conread position: | 208-352 |
| Cow position: | chr18:22143655-22143512 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 209-359 |
| Cow position: | chr18:20127239-20127089 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 26, 42 |
| Conread position: | 209-359 |
| Cow position: | chr18:45961401-45961255 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 19, 60 |
| Conread position: | 214-352 |
| Cow position: | chr18:38344679-38344815 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 68, 113 |
| Conread position: | 217-338 |
| Cow position: | chr18:15831716-15831597 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 218-342 |
| Cow position: | chr18:20423097-20422974 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 66, 47 |
| Conread position: | 218-342 |
| Cow position: | chr18:23424797-23424922 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 89, 73 |
| Conread position: | 218-351 |
| Cow position: | chr18:42060954-42061085 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 218-352 |
| Cow position: | chr18:23652745-23652611 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 218-357 |
| Cow position: | chr18:29796547-29796414 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 218-358 |
| Cow position: | chr18:51298357-51298499 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 218-359 |
| Cow position: | chr18:16842185-16842042 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 218-359 |
| Cow position: | chr18:26535633-26535491 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 218-360 |
| Cow position: | chr18:19363813-19363953 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 58, 100 |
| Conread position: | 224-361 |
| Cow position: | chr18:51587660-51587525 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 95, 74 |
| Conread position: | 225-361 |
| Cow position: | chr18:35359855-35359983 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 226-352 |
| Cow position: | chr18:34052109-34051981 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 227-359 |
| Cow position: | chr18:248927-248799 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 235-359 |
| Cow position: | chr18:2438871-2438746 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 238-364 |
| Cow position: | chr18:15689182-15689307 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 245-359 |
| Cow position: | chr18:46873958-46873845 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
Show alignments to all cow chromosomes.