Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056H21.3 |
| Conread position: | 187-338 |
| Cow position: | chr2:62309548-62309396 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 32, 119 |
| Conread position: | 187-352 |
| Cow position: | chr2:4070798-4070966 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 189-359 |
| Cow position: | chr2:2740345-2740512 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 7 |
| Conread position: | 189-359 |
| Cow position: | chr2:4384014-4383847 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 192-338 |
| Cow position: | chr2:63865442-63865296 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 27, 13 |
| Conread position: | 192-343 |
| Cow position: | chr2:14555865-14555714 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 105, 117 |
| Conread position: | 192-347 |
| Cow position: | chr2:68843055-68842900 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 93, 33 |
| Conread position: | 192-349 |
| Cow position: | chr2:10356788-10356632 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 27, 5 |
| Conread position: | 192-352 |
| Cow position: | chr2:9324882-9325042 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 90, 5 |
| Conread position: | 192-357 |
| Cow position: | chr2:50793628-50793794 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 25, 95 |
| Conread position: | 192-358 |
| Cow position: | chr2:39855673-39855841 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 192-359 |
| Cow position: | chr2:2382673-2382507 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 5 |
| Conread position: | 192-359 |
| Cow position: | chr2:14749481-14749644 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 89, 5 |
| Conread position: | 192-359 |
| Cow position: | chr2:26042355-26042190 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 127, 5 |
| Conread position: | 192-359 |
| Cow position: | chr2:62818825-62818656 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 192-359 |
| Cow position: | chr2:70579821-70579653 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 5 |
| Conread position: | 192-365 |
| Cow position: | chr2:80595427-80595258 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 26, 5 |
| Conread position: | 193-351 |
| Cow position: | chr2:53189075-53189228 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 193-359 |
| Cow position: | chr2:18061743-18061578 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 93, 24 |
| Conread position: | 193-359 |
| Cow position: | chr2:56753014-56752852 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 194-359 |
| Cow position: | chr2:4796641-4796805 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 197-338 |
| Cow position: | chr2:7721020-7720880 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 100 |
| Conread position: | 197-347 |
| Cow position: | chr2:31457376-31457527 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 20, 90 |
| Conread position: | 197-351 |
| Cow position: | chr2:46175371-46175218 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 197-357 |
| Cow position: | chr2:13604358-13604517 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 197-359 |
| Cow position: | chr2:29382790-29382629 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 197-359 |
| Cow position: | chr2:48748839-48748676 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 197-359 |
| Cow position: | chr2:52171147-52171306 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 197-361 |
| Cow position: | chr2:6055858-6056020 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 85, 28 |
| Conread position: | 202-359 |
| Cow position: | chr2:41461263-41461419 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 78, 43 |
| Conread position: | 210-350 |
| Cow position: | chr2:6935376-6935236 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 74, 23 |
| Conread position: | 211-357 |
| Cow position: | chr2:31113752-31113891 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 213-357 |
| Cow position: | chr2:793549-793695 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 214-361 |
| Cow position: | chr2:39672845-39672696 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 215-358 |
| Cow position: | chr2:992062-992204 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 218-338 |
| Cow position: | chr2:42309643-42309522 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 218-338 |
| Cow position: | chr2:53497000-53496879 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 218-342 |
| Cow position: | chr2:31155622-31155746 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 101, 37 |
| Conread position: | 218-343 |
| Cow position: | chr2:20916079-20915955 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 94 |
| Conread position: | 218-343 |
| Cow position: | chr2:64972975-64973107 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 218-346 |
| Cow position: | chr2:32835641-32835773 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 218-352 |
| Cow position: | chr2:41313804-41313937 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 218-352 |
| Cow position: | chr2:69419675-69419542 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 27 |
| Conread position: | 218-357 |
| Cow position: | chr2:29734734-29734870 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 105, 120 |
| Conread position: | 218-357 |
| Cow position: | chr2:47990347-47990485 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 218-357 |
| Cow position: | chr2:51594675-51594813 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 218-357 |
| Cow position: | chr2:52747410-52747272 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 218-359 |
| Cow position: | chr2:7498491-7498625 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 218-359 |
| Cow position: | chr2:24106304-24106446 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 218-359 |
| Cow position: | chr2:70663925-70664067 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 218-359 |
| Cow position: | chr2:70945315-70945454 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 218-359 |
| Cow position: | chr2:82054931-82054793 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 218-359 |
| Cow position: | chr2:82311287-82311148 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 64, 78 |
| Conread position: | 219-324 |
| Cow position: | chr2:17427048-17427153 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 85 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 219-357 |
| Cow position: | chr2:19137981-19137842 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 219-358 |
| Cow position: | chr2:28118408-28118550 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 221-359 |
| Cow position: | chr2:20250622-20250761 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 224-314 |
| Cow position: | chr2:50400342-50400432 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 80 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 224-359 |
| Cow position: | chr2:7947227-7947091 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 225-349 |
| Cow position: | chr2:30640106-30640231 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 225-358 |
| Cow position: | chr2:51027872-51028007 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 57, 76 |
| Conread position: | 225-361 |
| Cow position: | chr2:29612473-29612605 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 104, 9 |
| Conread position: | 226-357 |
| Cow position: | chr2:43718819-43718950 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 228-359 |
| Cow position: | chr2:59380563-59380436 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 229-359 |
| Cow position: | chr2:12198984-12198859 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 19 |
| Conread position: | 231-352 |
| Cow position: | chr2:73386924-73386802 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 243-357 |
| Cow position: | chr2:51769541-51769656 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 557-708 |
| Cow position: | chr2:51041557-51041412 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
Show alignments to all cow chromosomes.