Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056H21.3 |
| Conread position: | 159-336 |
| Cow position: | chr3:62884035-62884210 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 185-361 |
| Cow position: | chr3:61117003-61116828 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 34, 12 |
| Conread position: | 187-344 |
| Cow position: | chr3:8393792-8393949 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 187-358 |
| Cow position: | chr3:34741723-34741896 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 84 |
| Conread position: | 187-359 |
| Cow position: | chr3:23092123-23091950 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 188-338 |
| Cow position: | chr3:31907285-31907135 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 31, 71 |
| Conread position: | 188-352 |
| Cow position: | chr3:12255334-12255499 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 189-358 |
| Cow position: | chr3:56637526-56637689 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 30, 8 |
| Conread position: | 191-352 |
| Cow position: | chr3:74846850-74846691 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 91, 54 |
| Conread position: | 191-359 |
| Cow position: | chr3:36100696-36100863 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 24, 33 |
| Conread position: | 191-359 |
| Cow position: | chr3:77224976-77225144 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 93, 25 |
| Conread position: | 192-338 |
| Cow position: | chr3:55992007-55991860 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 192-349 |
| Cow position: | chr3:51492642-51492800 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 27, 5 |
| Conread position: | 192-352 |
| Cow position: | chr3:2198744-2198901 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 192-357 |
| Cow position: | chr3:20993672-20993836 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 91, 61 |
| Conread position: | 192-357 |
| Cow position: | chr3:27532796-27532631 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 33, 5 |
| Conread position: | 192-359 |
| Cow position: | chr3:15655287-15655121 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 192-359 |
| Cow position: | chr3:34675584-34675748 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 192-359 |
| Cow position: | chr3:50614499-50614666 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 86, 5 |
| Conread position: | 192-359 |
| Cow position: | chr3:53588526-53588358 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 27, 105 |
| Conread position: | 192-359 |
| Cow position: | chr3:66708210-66708041 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 27, 5 |
| Conread position: | 192-361 |
| Cow position: | chr3:48629733-48629563 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 27, 164 |
| Conread position: | 192-362 |
| Cow position: | chr3:14633125-14632955 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 99, 22 |
| Conread position: | 193-347 |
| Cow position: | chr3:78530390-78530552 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 196-359 |
| Cow position: | chr3:69105265-69105431 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 197-350 |
| Cow position: | chr3:14625524-14625374 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 197-359 |
| Cow position: | chr3:27785138-27785295 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 197-359 |
| Cow position: | chr3:49132186-49132038 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 199-359 |
| Cow position: | chr3:11920172-11920008 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 19, 146 |
| Conread position: | 199-359 |
| Cow position: | chr3:69516954-69517111 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 120, 29 |
| Conread position: | 203-350 |
| Cow position: | chr3:68262640-68262780 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 214-337 |
| Cow position: | chr3:61322726-61322848 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 214-350 |
| Cow position: | chr3:64172327-64172456 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 214-359 |
| Cow position: | chr3:37186711-37186852 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 214-360 |
| Cow position: | chr3:46226331-46226482 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 52, 10 |
| Conread position: | 217-352 |
| Cow position: | chr3:18458773-18458640 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 217-357 |
| Cow position: | chr3:11711847-11711988 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 217-357 |
| Cow position: | chr3:12712032-12711892 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 217-358 |
| Cow position: | chr3:64319080-64319223 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 217-359 |
| Cow position: | chr3:8457540-8457680 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 218-316 |
| Cow position: | chr3:23944986-23945084 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 89 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 218-330 |
| Cow position: | chr3:20879000-20878888 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 218-338 |
| Cow position: | chr3:51146782-51146662 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 66, 99 |
| Conread position: | 218-338 |
| Cow position: | chr3:54862528-54862408 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 218-338 |
| Cow position: | chr3:74611453-74611572 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 65, 30 |
| Conread position: | 218-344 |
| Cow position: | chr3:28477976-28478103 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 218-349 |
| Cow position: | chr3:15052065-15051933 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 218-352 |
| Cow position: | chr3:43726963-43727097 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 73, 56 |
| Conread position: | 218-357 |
| Cow position: | chr3:5097093-5097230 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 218-357 |
| Cow position: | chr3:15992601-15992741 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 218-357 |
| Cow position: | chr3:26553827-26553692 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 218-359 |
| Cow position: | chr3:15685034-15684896 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 67, 25 |
| Conread position: | 218-359 |
| Cow position: | chr3:18216884-18216740 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 218-359 |
| Cow position: | chr3:55777920-55778062 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 64, 100 |
| Conread position: | 219-326 |
| Cow position: | chr3:36125687-36125581 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 219-335 |
| Cow position: | chr3:11124890-11124773 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 219-338 |
| Cow position: | chr3:74205922-74205800 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 219-351 |
| Cow position: | chr3:33327593-33327726 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 224-352 |
| Cow position: | chr3:61009544-61009415 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 75 |
| Conread position: | 225-359 |
| Cow position: | chr3:3736189-3736324 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 225-359 |
| Cow position: | chr3:15221626-15221492 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 59, 35 |
| Conread position: | 225-359 |
| Cow position: | chr3:27545928-27545794 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 225-359 |
| Cow position: | chr3:42480510-42480644 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 225-359 |
| Cow position: | chr3:42584434-42584567 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 228-357 |
| Cow position: | chr3:28238675-28238549 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 236-361 |
| Cow position: | chr3:9074441-9074320 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 239-359 |
| Cow position: | chr3:26089096-26088975 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 249-359 |
| Cow position: | chr3:77981402-77981291 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 250-359 |
| Cow position: | chr3:41550459-41550349 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 35, 0 |
Show alignments to all cow chromosomes.