Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056H21.3 |
| Conread position: | 42-185 |
| Cow position: | chr4:22156565-22156420 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 24, 95 |
| Conread position: | 187-359 |
| Cow position: | chr4:36945321-36945152 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 96, 27 |
| Conread position: | 189-358 |
| Cow position: | chr4:40623224-40623060 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 29, 7 |
| Conread position: | 191-341 |
| Cow position: | chr4:2610109-2610254 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 191-344 |
| Cow position: | chr4:5999315-5999163 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 191-352 |
| Cow position: | chr4:28399544-28399382 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 191-359 |
| Cow position: | chr4:6166429-6166261 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 95, 150 |
| Conread position: | 191-359 |
| Cow position: | chr4:27997561-27997729 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 83, 19 |
| Conread position: | 192-314 |
| Cow position: | chr4:21259092-21259216 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 192-336 |
| Cow position: | chr4:45116183-45116040 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 94, 124 |
| Conread position: | 192-338 |
| Cow position: | chr4:22115485-22115630 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 192-343 |
| Cow position: | chr4:23166783-23166934 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 92, 5 |
| Conread position: | 192-350 |
| Cow position: | chr4:41602727-41602882 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 84, 5 |
| Conread position: | 192-351 |
| Cow position: | chr4:243106-243265 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 90, 5 |
| Conread position: | 192-352 |
| Cow position: | chr4:488545-488388 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 92, 17 |
| Conread position: | 192-352 |
| Cow position: | chr4:34369573-34369415 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 25 |
| Conread position: | 192-352 |
| Cow position: | chr4:37880809-37880970 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 31, 5 |
| Conread position: | 192-352 |
| Cow position: | chr4:41371063-41370906 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 192-359 |
| Cow position: | chr4:37827968-37827807 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 192-359 |
| Cow position: | chr4:52087813-52087969 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 192-359 |
| Cow position: | chr4:61624709-61624545 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 192-361 |
| Cow position: | chr4:50769888-50769723 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 193-352 |
| Cow position: | chr4:33395824-33395663 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 194-359 |
| Cow position: | chr4:58834529-58834361 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 29, 76 |
| Conread position: | 197-342 |
| Cow position: | chr4:16339716-16339574 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 137, 19 |
| Conread position: | 197-347 |
| Cow position: | chr4:38181560-38181714 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 197-352 |
| Cow position: | chr4:65841887-65841731 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 19, 138 |
| Conread position: | 197-359 |
| Cow position: | chr4:21250146-21249990 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 22, 58 |
| Conread position: | 197-359 |
| Cow position: | chr4:51122939-51123101 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 86, 27 |
| Conread position: | 197-359 |
| Cow position: | chr4:51605732-51605571 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 199-343 |
| Cow position: | chr4:68795415-68795267 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 104 |
| Conread position: | 200-352 |
| Cow position: | chr4:21517120-21516968 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 84, 75 |
| Conread position: | 201-352 |
| Cow position: | chr4:9681188-9681341 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 210-359 |
| Cow position: | chr4:17378942-17378795 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 12, 58 |
| Conread position: | 214-347 |
| Cow position: | chr4:5913449-5913316 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 214-352 |
| Cow position: | chr4:3440304-3440436 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 120, 67 |
| Conread position: | 217-338 |
| Cow position: | chr4:21365308-21365430 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 217-357 |
| Cow position: | chr4:19408098-19407957 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 218-338 |
| Cow position: | chr4:23758708-23758828 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 64, 99 |
| Conread position: | 218-338 |
| Cow position: | chr4:41154548-41154669 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 218-338 |
| Cow position: | chr4:54146560-54146441 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 218-342 |
| Cow position: | chr4:48283378-48283251 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 218-350 |
| Cow position: | chr4:28377758-28377627 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 218-357 |
| Cow position: | chr4:13026205-13026344 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 100 |
| Conread position: | 218-357 |
| Cow position: | chr4:44782276-44782414 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 218-358 |
| Cow position: | chr4:20066316-20066177 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 57, 27 |
| Conread position: | 218-359 |
| Cow position: | chr4:25972800-25972942 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 218-359 |
| Cow position: | chr4:40434001-40433860 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 219-338 |
| Cow position: | chr4:10992294-10992176 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 219-352 |
| Cow position: | chr4:5580460-5580593 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 219-359 |
| Cow position: | chr4:40823210-40823071 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 66, 26 |
| Conread position: | 220-359 |
| Cow position: | chr4:6208363-6208503 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 224-357 |
| Cow position: | chr4:19102976-19102842 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 60, 85 |
| Conread position: | 224-359 |
| Cow position: | chr4:33030458-33030592 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 58, 117 |
| Conread position: | 225-351 |
| Cow position: | chr4:35870112-35870239 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 225-357 |
| Cow position: | chr4:39231613-39231481 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 229-352 |
| Cow position: | chr4:3837186-3837309 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 230-359 |
| Cow position: | chr4:5002678-5002804 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 58, 42 |
| Conread position: | 239-357 |
| Cow position: | chr4:11429938-11430060 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
Show alignments to all cow chromosomes.