Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056H21.3 |
| Conread position: | 174-345 |
| Cow position: | chr9:50004158-50003984 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 192-352 |
| Cow position: | chr9:31587955-31588116 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 5 |
| Conread position: | 192-357 |
| Cow position: | chr9:3932107-3931942 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 13, 94 |
| Conread position: | 192-357 |
| Cow position: | chr9:34204274-34204111 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 192-358 |
| Cow position: | chr9:5575463-5575301 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 5 |
| Conread position: | 192-359 |
| Cow position: | chr9:10127528-10127688 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 192-359 |
| Cow position: | chr9:34106866-34106697 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 33, 5 |
| Conread position: | 192-359 |
| Cow position: | chr9:54924767-54924598 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 192-360 |
| Cow position: | chr9:47906137-47906302 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 86, 23 |
| Conread position: | 192-363 |
| Cow position: | chr9:9200581-9200748 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 27, 5 |
| Conread position: | 193-352 |
| Cow position: | chr9:43871124-43870962 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 104 |
| Conread position: | 195-360 |
| Cow position: | chr9:15951011-15951177 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 8, 31 |
| Conread position: | 197-341 |
| Cow position: | chr9:25469180-25469044 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 80 |
| Conread position: | 197-350 |
| Cow position: | chr9:29108678-29108526 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 20, 91 |
| Conread position: | 197-357 |
| Cow position: | chr9:39152538-39152698 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 131 |
| Conread position: | 197-359 |
| Cow position: | chr9:39428656-39428820 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 22, 120 |
| Conread position: | 197-374 |
| Cow position: | chr9:31215868-31215691 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 87, 121 |
| Conread position: | 198-350 |
| Cow position: | chr9:20961142-20961291 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 84, 52 |
| Conread position: | 198-358 |
| Cow position: | chr9:4858676-4858516 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 84, 20 |
| Conread position: | 198-359 |
| Cow position: | chr9:5029652-5029489 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 201-362 |
| Cow position: | chr9:42901186-42901022 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 81, 126 |
| Conread position: | 204-352 |
| Cow position: | chr9:35592149-35591998 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 14, 94 |
| Conread position: | 209-341 |
| Cow position: | chr9:34310154-34310022 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 68, 89 |
| Conread position: | 214-359 |
| Cow position: | chr9:9315431-9315287 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 214-359 |
| Cow position: | chr9:9823383-9823526 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 215-347 |
| Cow position: | chr9:38344012-38343879 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 215-359 |
| Cow position: | chr9:11319512-11319654 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 215-359 |
| Cow position: | chr9:28983306-28983163 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 217-338 |
| Cow position: | chr9:24399562-24399684 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 218-331 |
| Cow position: | chr9:27052219-27052333 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 66, 109 |
| Conread position: | 218-338 |
| Cow position: | chr9:14184783-14184662 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 218-338 |
| Cow position: | chr9:15034023-15033903 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 69, 35 |
| Conread position: | 218-338 |
| Cow position: | chr9:21462748-21462869 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 218-338 |
| Cow position: | chr9:32848010-32847886 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 218-347 |
| Cow position: | chr9:41957926-41957795 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 16, 125 |
| Conread position: | 218-348 |
| Cow position: | chr9:32817020-32817151 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 218-349 |
| Cow position: | chr9:43013842-43013711 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 66, 35 |
| Conread position: | 218-350 |
| Cow position: | chr9:3724944-3725076 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 121, 54 |
| Conread position: | 218-351 |
| Cow position: | chr9:24997401-24997531 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 218-351 |
| Cow position: | chr9:42445861-42445995 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 218-352 |
| Cow position: | chr9:4861506-4861371 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 218-352 |
| Cow position: | chr9:6225335-6225468 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 82, 56 |
| Conread position: | 218-352 |
| Cow position: | chr9:11364013-11363882 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 61, 110 |
| Conread position: | 218-352 |
| Cow position: | chr9:19493344-19493479 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 218-357 |
| Cow position: | chr9:8534572-8534708 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 218-357 |
| Cow position: | chr9:20897018-20896878 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 53, 33 |
| Conread position: | 218-358 |
| Cow position: | chr9:8951025-8950885 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 218-359 |
| Cow position: | chr9:214350-214481 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 218-359 |
| Cow position: | chr9:10666907-10667045 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 52 |
| Conread position: | 218-359 |
| Cow position: | chr9:11201711-11201569 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 218-359 |
| Cow position: | chr9:23042895-23042758 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 65, 84 |
| Conread position: | 218-359 |
| Cow position: | chr9:54437384-54437244 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 219-358 |
| Cow position: | chr9:32625125-32624988 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 100, 68 |
| Conread position: | 220-359 |
| Cow position: | chr9:23943399-23943259 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 220-359 |
| Cow position: | chr9:29808573-29808434 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 130 |
| Conread position: | 224-352 |
| Cow position: | chr9:45171106-45171236 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 58, 50 |
| Conread position: | 225-338 |
| Cow position: | chr9:56861119-56861007 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 225-358 |
| Cow position: | chr9:37099120-37099258 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 52, 34 |
| Conread position: | 225-359 |
| Cow position: | chr9:2888095-2887962 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 225-359 |
| Cow position: | chr9:16118838-16118706 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 225-360 |
| Cow position: | chr9:34725399-34725535 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 240-359 |
| Cow position: | chr9:27292179-27292299 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 73 |
| Conread position: | 242-359 |
| Cow position: | chr9:20200388-20200273 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 243-338 |
| Cow position: | chr9:15006656-15006753 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 83 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 243-348 |
| Cow position: | chr9:13761196-13761090 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
Show alignments to all cow chromosomes.