Cow genome map

Conread name: Ss1.1-Pig4-TMW8056H21.3

Conread position: 145-338
Cow position: chrX:6682574-6682779 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 184-326
Cow position: chrX:28836001-28835859 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 98, 34

Conread position: 186-352
Cow position: chrX:31515074-31515243 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 78, 58

Conread position: 187-359
Cow position: chrX:21664817-21664644 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 136
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 32, 146

Conread position: 187-361
Cow position: chrX:11633586-11633760 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 189-352
Cow position: chrX:36514985-36514824 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 189-357
Cow position: chrX:6041305-6041135 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 30, 0

Conread position: 190-338
Cow position: chrX:7344997-7345143 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 7, 0

Conread position: 191-349
Cow position: chrX:40692843-40692685 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 191-351
Cow position: chrX:22326025-22326188 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 13, 130

Conread position: 191-352
Cow position: chrX:19930563-19930720 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 88, 32

Conread position: 191-352
Cow position: chrX:34565191-34565355 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 90, 0

Conread position: 191-353
Cow position: chrX:8913830-8913994 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 91, 0

Conread position: 191-353
Cow position: chrX:8915574-8915738 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 91, 0

Conread position: 191-361
Cow position: chrX:25571085-25570915 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 120
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 91, 6

Conread position: 192-305
Cow position: chrX:488403-488517 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 28, 5

Conread position: 192-338
Cow position: chrX:6563432-6563579 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 5

Conread position: 192-338
Cow position: chrX:32743446-32743593 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 27, 5

Conread position: 192-344
Cow position: chrX:40642898-40643053 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 192-359
Cow position: chrX:11746758-11746919 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 29, 5

Conread position: 192-359
Cow position: chrX:26493725-26493557 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 25, 5

Conread position: 192-359
Cow position: chrX:27176400-27176236 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 88, 5

Conread position: 192-359
Cow position: chrX:27287822-27287660 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 26, 5

Conread position: 192-359
Cow position: chrX:28111418-28111586 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 27, 5

Conread position: 192-359
Cow position: chrX:29032321-29032487 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 27, 5

Conread position: 192-360
Cow position: chrX:25338095-25338265 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 21, 0

Conread position: 192-361
Cow position: chrX:24259670-24259503 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 5, 0

Conread position: 193-351
Cow position: chrX:43426203-43426363 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 32, 103

Conread position: 193-352
Cow position: chrX:24132239-24132081 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 26, 93

Conread position: 193-359
Cow position: chrX:21566319-21566483 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 89, 23

Conread position: 194-363
Cow position: chrX:20376880-20377051 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 19, 33

Conread position: 197-359
Cow position: chrX:7497154-7497319 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 22, 0

Conread position: 197-359
Cow position: chrX:36009996-36009836 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 89, 0

Conread position: 197-363
Cow position: chrX:25441079-25440918 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 20, 79

Conread position: 209-359
Cow position: chrX:31260699-31260543 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 210-359
Cow position: chrX:6203474-6203617 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 109, 41

Conread position: 210-366
Cow position: chrX:32623496-32623654 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 83, 0

Conread position: 214-351
Cow position: chrX:17630873-17630735 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 114
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 68, 0

Conread position: 214-352
Cow position: chrX:32310038-32310174 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 116
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 68, 10

Conread position: 214-352
Cow position: chrX:39126265-39126395 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 214-358
Cow position: chrX:6656316-6656458 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 7, 114

Conread position: 215-352
Cow position: chrX:10959463-10959326 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 49, 81

Conread position: 218-346
Cow position: chrX:25232528-25232656 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 109
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 218-350
Cow position: chrX:1616107-1615976 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 62, 109

Conread position: 218-352
Cow position: chrX:29120983-29121116 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 100
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 218-352
Cow position: chrX:29680323-29680192 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 59, 0

Conread position: 218-352
Cow position: chrX:39415429-39415301 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 114
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 11, 0

Conread position: 218-357
Cow position: chrX:1499604-1499739 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 90, 25

Conread position: 218-357
Cow position: chrX:11313846-11313706 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 65, 0

Conread position: 218-357
Cow position: chrX:29601893-29601754 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 218-357
Cow position: chrX:38964042-38964182 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 218-359
Cow position: chrX:5638231-5638093 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 218-359
Cow position: chrX:11717851-11717707 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 60, 0

Conread position: 218-359
Cow position: chrX:27450061-27449922 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 42, 0

Conread position: 218-359
Cow position: chrX:32431558-32431700 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 73, 0

Conread position: 218-359
Cow position: chrX:39546037-39545903 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 32, 0

Conread position: 218-361
Cow position: chrX:46072883-46072739 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 75, 67

Conread position: 218-366
Cow position: chrX:11589650-11589505 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 219-349
Cow position: chrX:38654494-38654364 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 97
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 219-351
Cow position: chrX:42500440-42500566 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 220-359
Cow position: chrX:42011218-42011357 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 221-337
Cow position: chrX:30862253-30862370 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 57, 0

Conread position: 224-338
Cow position: chrX:16514321-16514207 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 97
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 62, 94

Conread position: 224-341
Cow position: chrX:38999798-38999914 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 224-343
Cow position: chrX:6633021-6633140 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 224-359
Cow position: chrX:3154300-3154166 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 39, 21

Conread position: 224-359
Cow position: chrX:9539267-9539399 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 59, 114

Conread position: 225-357
Cow position: chrX:17541902-17542034 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 225-358
Cow position: chrX:23414428-23414293 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 5, 0

Conread position: 225-359
Cow position: chrX:630364-630233 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 63, 0

Conread position: 226-357
Cow position: chrX:27680340-27680472 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 229-359
Cow position: chrX:29408077-29407946 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 55, 0

Conread position: 237-347
Cow position: chrX:6367820-6367716 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 243-352
Cow position: chrX:7806385-7806495 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 95
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 41, 0

Conread position: 243-357
Cow position: chrX:41733245-41733125 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 81, 32

Conread position: 247-357
Cow position: chrX:8097464-8097354 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 87
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 251-359
Cow position: chrX:46612746-46612638 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 86
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.