Cow genome map

Conread name: Ss1.1-Pig4-TMW8056N24.5

Conread position: 324-882
Cow position: chr1:69345688-69346251 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 152
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 510, 0

Conread position: 572-759
Cow position: chr1:26438563-26438744 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 113, 15

Conread position: 616-834
Cow position: chr1:30068698-30068913 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 160
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 68, 30

Conread position: 616-896
Cow position: chr1:82423033-82422756 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 38

Conread position: 616-989
Cow position: chr1:82419781-82419426 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 130

Conread position: 616-1029
Cow position: chr1:98867961-98868380 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 299
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 36, 94

Conread position: 616-1032
Cow position: chr1:69240205-69239795 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 29

Conread position: 619-870
Cow position: chr1:42184657-42184905 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 619-989
Cow position: chr1:91819649-91819298 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 256
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 60, 35

Conread position: 619-1017
Cow position: chr1:75266633-75267040 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 22

Conread position: 619-1032
Cow position: chr1:1778313-1777911 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 65

Conread position: 620-1032
Cow position: chr1:22607867-22607459 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 34

Conread position: 621-989
Cow position: chr1:22607218-22606861 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 33

Conread position: 621-996
Cow position: chr1:96142331-96142689 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 262
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 61, 33

Conread position: 621-1029
Cow position: chr1:7434768-7435173 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 90

Conread position: 621-1032
Cow position: chr1:22418835-22419229 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 12

Conread position: 622-867
Cow position: chr1:39067183-39066945 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 179
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 66, 32

Conread position: 622-1032
Cow position: chr1:80303857-80303480 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 286
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 218, 32

Conread position: 630-989
Cow position: chr1:82420599-82420254 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 248
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 46, 52

Conread position: 631-973
Cow position: chr1:13797681-13798011 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 239
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 53, 14

Conread position: 637-1032
Cow position: chr1:93571779-93571400 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 72

Conread position: 639-890
Cow position: chr1:17467692-17467438 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 179
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 10, 68

Conread position: 643-1032
Cow position: chr1:67905654-67905282 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 68

Conread position: 646-989
Cow position: chr1:78728508-78728836 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 232
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 43, 63

Conread position: 649-1029
Cow position: chr1:46241768-46241398 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 260
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 11, 38

Conread position: 651-1032
Cow position: chr1:93429653-93430019 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 261
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 118, 22

Conread position: 657-1017
Cow position: chr1:91994977-91995318 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 246
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 66, 12

Conread position: 659-811
Cow position: chr1:42051015-42051157 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 25, 48

Conread position: 659-866
Cow position: chr1:57893105-57892904 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 88, 29

Conread position: 659-867
Cow position: chr1:6971989-6971782 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 187, 29

Conread position: 659-871
Cow position: chr1:24229719-24229930 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 64, 29

Conread position: 659-883
Cow position: chr1:70256542-70256764 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 181, 29

Conread position: 659-989
Cow position: chr1:47636054-47636371 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 224
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 15, 30

Conread position: 660-876
Cow position: chr1:60786150-60785931 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 10, 24

Conread position: 660-878
Cow position: chr1:100077390-100077599 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 162
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 10, 26

Conread position: 660-890
Cow position: chr1:91840996-91840767 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 180, 30

Conread position: 660-892
Cow position: chr1:9153163-9153395 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 56, 30

Conread position: 660-1022
Cow position: chr1:93580022-93579678 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 245
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 180, 21

Conread position: 660-1032
Cow position: chr1:81469219-81468866 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 259
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 36, 32

Conread position: 665-850
Cow position: chr1:22659695-22659880 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 17, 100

Conread position: 673-987
Cow position: chr1:46283632-46283323 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 207
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 11, 36

Conread position: 680-1032
Cow position: chr1:2529755-2530092 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 238
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 160, 8

Conread position: 687-865
Cow position: chr1:22605721-22605548 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 140
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 153, 13

Conread position: 687-1032
Cow position: chr1:60452517-60452183 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 237
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 153, 17

Conread position: 688-889
Cow position: chr1:98288947-98289149 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 37, 20

Conread position: 689-852
Cow position: chr1:8319075-8319237 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 147, 14

Conread position: 689-890
Cow position: chr1:22442654-22442453 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 34, 15

Conread position: 689-972
Cow position: chr1:9147533-9147802 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 202
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 157, 17

Conread position: 689-990
Cow position: chr1:10768487-10768794 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 238

Conread position: 689-1030
Cow position: chr1:93440876-93441206 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 243
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 121, 17

Conread position: 693-869
Cow position: chr1:101657280-101657109 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 146, 11

Conread position: 695-834
Cow position: chr1:96313074-96313213 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 696-880
Cow position: chr1:78060422-78060236 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 27, 14

Conread position: 696-1032
Cow position: chr1:91977327-91977007 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 241
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 57, 10

Conread position: 702-838
Cow position: chr1:44129013-44128877 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 707-870
Cow position: chr1:5376633-5376797 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 133, 0

Conread position: 707-1029
Cow position: chr1:89093604-89093915 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 224
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 9, 79

Conread position: 707-1032
Cow position: chr1:102310724-102311044 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 229
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 9, 51

Conread position: 711-895
Cow position: chr1:22590876-22590696 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 145
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 74, 0

Conread position: 713-1032
Cow position: chr1:28469774-28470078 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 66

Conread position: 715-890
Cow position: chr1:83790095-83789918 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 125, 0

Conread position: 715-981
Cow position: chr1:13574960-13575214 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 184
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 21, 34

Conread position: 725-870
Cow position: chr1:58050191-58050047 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 119
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 65, 0

Conread position: 725-870
Cow position: chr1:89355594-89355452 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 126, 47

Conread position: 725-1017
Cow position: chr1:30087447-30087162 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 215
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 255, 152

Conread position: 726-890
Cow position: chr1:14382577-14382739 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 120, 143

Conread position: 727-992
Cow position: chr1:72734076-72734324 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 11, 40

Conread position: 727-1028
Cow position: chr1:31342797-31342507 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 212
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 114, 121

Conread position: 727-1032
Cow position: chr1:62197532-62197234 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 223
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 194, 134

Conread position: 729-1029
Cow position: chr1:86643074-86643359 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 206
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 10, 20

Conread position: 734-856
Cow position: chr1:23714037-23713913 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 70, 0

Conread position: 737-1032
Cow position: chr1:70099222-70099517 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 19

Conread position: 738-870
Cow position: chr1:93131255-93131122 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 102, 0

Conread position: 738-887
Cow position: chr1:51533488-51533338 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 74, 41

Conread position: 738-1029
Cow position: chr1:23832616-23832325 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 192
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 217, 165

Conread position: 738-1032
Cow position: chr1:90862131-90862413 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 204
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 102, 125

Conread position: 740-896
Cow position: chr1:93428147-93427993 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 21, 0

Conread position: 745-1030
Cow position: chr1:89939188-89938898 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 123

Conread position: 754-969
Cow position: chr1:64729382-64729180 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 86, 105

Conread position: 759-1032
Cow position: chr1:66401582-66401842 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 205
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 149, 69

Conread position: 760-891
Cow position: chr1:82880965-82880838 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 107, 0

Conread position: 766-1029
Cow position: chr1:70106337-70106586 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 190
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 46, 106

Conread position: 791-1032
Cow position: chr1:26511772-26512011 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 164
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 115, 42

Conread position: 795-1032
Cow position: chr1:10807635-10807389 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 167
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 802-1028
Cow position: chr1:89935224-89934989 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 170
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 38, 13

Conread position: 807-1032
Cow position: chr1:26439099-26439324 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 156
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 69, 107

Conread position: 881-1032
Cow position: chr1:22659869-22660020 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 20, 39

Conread position: 902-1032
Cow position: chr1:22590503-22590373 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 98, 17

Show alignments to all cow chromosomes.