Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056N24.5 |
| Conread position: | 580-978 |
| Cow position: | chr10:59524315-59524715 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 74 |
| Conread position: | 582-1032 |
| Cow position: | chr10:41118169-41118608 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 303 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 41, 79 |
| Conread position: | 613-1032 |
| Cow position: | chr10:34730085-34730495 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 271 |
| Conread position: | 616-991 |
| Cow position: | chr10:30820579-30820230 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 616-1029 |
| Cow position: | chr10:55142953-55143350 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 26 |
| Conread position: | 616-1032 |
| Cow position: | chr10:21341017-21341422 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 616-1032 |
| Cow position: | chr10:36206639-36206209 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 16 |
| Conread position: | 618-1025 |
| Cow position: | chr10:23074838-23075237 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 81 |
| Conread position: | 621-777 |
| Cow position: | chr10:15167655-15167806 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 621-866 |
| Cow position: | chr10:58684722-58684966 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 21 |
| Conread position: | 621-959 |
| Cow position: | chr10:38367163-38366825 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 22 |
| Conread position: | 631-838 |
| Cow position: | chr10:3825817-3826022 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 18, 30 |
| Conread position: | 631-870 |
| Cow position: | chr10:55116226-55116460 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 208, 55 |
| Conread position: | 631-1024 |
| Cow position: | chr10:64156666-64156278 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 265, 29 |
| Conread position: | 639-882 |
| Cow position: | chr10:16980050-16979818 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 49, 14 |
| Conread position: | 644-1030 |
| Cow position: | chr10:50565467-50565842 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 63 |
| Conread position: | 644-1032 |
| Cow position: | chr10:9372326-9372703 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 65 |
| Conread position: | 648-887 |
| Cow position: | chr10:9882931-9883153 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 654-837 |
| Cow position: | chr10:36297840-36297655 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 56 |
| Conread position: | 659-869 |
| Cow position: | chr10:36790583-36790376 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 35, 160 |
| Conread position: | 659-870 |
| Cow position: | chr10:23451862-23451649 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 660-844 |
| Cow position: | chr10:21010872-21010697 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 661-842 |
| Cow position: | chr10:53822471-53822291 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 661-933 |
| Cow position: | chr10:14606462-14606189 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 180, 45 |
| Conread position: | 663-983 |
| Cow position: | chr10:55117639-55117952 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 18 |
| Conread position: | 665-890 |
| Cow position: | chr10:41265713-41265946 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 680-1028 |
| Cow position: | chr10:65205756-65206090 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 46, 8 |
| Conread position: | 681-867 |
| Cow position: | chr10:48450693-48450505 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 681-1022 |
| Cow position: | chr10:30615436-30615775 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 203 |
| Conread position: | 687-907 |
| Cow position: | chr10:64208459-64208672 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 27, 16 |
| Conread position: | 687-1032 |
| Cow position: | chr10:9108816-9109146 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 74 |
| Conread position: | 688-875 |
| Cow position: | chr10:16698883-16699067 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 28, 9 |
| Conread position: | 689-989 |
| Cow position: | chr10:14615511-14615219 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 182, 15 |
| Conread position: | 689-989 |
| Cow position: | chr10:14894310-14894588 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 690-990 |
| Cow position: | chr10:3873432-3873718 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 6, 49 |
| Conread position: | 695-1032 |
| Cow position: | chr10:52670954-52670624 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 171 |
| Conread position: | 698-1032 |
| Cow position: | chr10:16899809-16900130 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 128, 39 |
| Conread position: | 700-969 |
| Cow position: | chr10:55103138-55103394 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 43 |
| Conread position: | 702-850 |
| Cow position: | chr10:31164276-31164428 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 137 |
| Conread position: | 704-1032 |
| Cow position: | chr10:26289216-26288898 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 705-1032 |
| Cow position: | chr10:50463613-50463309 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 166, 18 |
| Conread position: | 718-1032 |
| Cow position: | chr10:29706880-29707177 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 272, 129 |
| Conread position: | 723-908 |
| Cow position: | chr10:38835174-38835357 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 730-991 |
| Cow position: | chr10:55059224-55059475 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 34 |
| Conread position: | 734-1032 |
| Cow position: | chr10:57077194-57076903 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 736-1031 |
| Cow position: | chr10:16741267-16741551 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 738-1018 |
| Cow position: | chr10:25503218-25502951 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 255, 143 |
| Conread position: | 740-1032 |
| Cow position: | chr10:9117602-9117899 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 106, 71 |
| Conread position: | 741-990 |
| Cow position: | chr10:64374697-64374964 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 743-1032 |
| Cow position: | chr10:39612059-39612346 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 146 |
| Conread position: | 760-865 |
| Cow position: | chr10:16314223-16314327 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 86 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 772-989 |
| Cow position: | chr10:15168231-15168441 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 68, 101 |
Show alignments to all cow chromosomes.