Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056N24.5 |
| Conread position: | 561-837 |
| Cow position: | chr11:15636355-15636084 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 570-954 |
| Cow position: | chr11:11396414-11396780 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 578-867 |
| Cow position: | chr11:37328084-37328366 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 103, 14 |
| Conread position: | 578-949 |
| Cow position: | chr11:65479819-65479466 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 616-802 |
| Cow position: | chr11:68169601-68169421 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 616-827 |
| Cow position: | chr11:31815259-31815465 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 616-1032 |
| Cow position: | chr11:12336563-12336152 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 200 |
| Conread position: | 616-1032 |
| Cow position: | chr11:65753280-65752868 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 285 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 74, 38 |
| Conread position: | 619-935 |
| Cow position: | chr11:41226302-41225989 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 263 |
| Conread position: | 621-1032 |
| Cow position: | chr11:32770369-32770757 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 32 |
| Conread position: | 622-893 |
| Cow position: | chr11:433089-433350 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 101, 25 |
| Conread position: | 622-1024 |
| Cow position: | chr11:33442284-33442667 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 50 |
| Conread position: | 626-890 |
| Cow position: | chr11:59969479-59969745 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 90, 65 |
| Conread position: | 627-809 |
| Cow position: | chr11:7066548-7066364 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 629-870 |
| Cow position: | chr11:30473894-30474135 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 631-1008 |
| Cow position: | chr11:72345212-72344855 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 260 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 631-1029 |
| Cow position: | chr11:71161929-71161545 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 210, 59 |
| Conread position: | 631-1032 |
| Cow position: | chr11:36397130-36397505 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 228, 17 |
| Conread position: | 631-1032 |
| Cow position: | chr11:48059386-48059019 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 54, 26 |
| Conread position: | 632-834 |
| Cow position: | chr11:35617016-35616813 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 9, 18 |
| Conread position: | 632-844 |
| Cow position: | chr11:18180149-18179939 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 639-829 |
| Cow position: | chr11:6887250-6887063 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 639-894 |
| Cow position: | chr11:32075532-32075788 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 10, 67 |
| Conread position: | 640-855 |
| Cow position: | chr11:83266395-83266181 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 92, 68 |
| Conread position: | 640-987 |
| Cow position: | chr11:85701631-85701960 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 200, 35 |
| Conread position: | 644-890 |
| Cow position: | chr11:37318332-37318580 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 41, 70 |
| Conread position: | 645-844 |
| Cow position: | chr11:58354718-58354911 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 34, 64 |
| Conread position: | 647-890 |
| Cow position: | chr11:64035064-64035309 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 49, 43 |
| Conread position: | 654-865 |
| Cow position: | chr11:35745511-35745718 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 42, 154 |
| Conread position: | 655-890 |
| Cow position: | chr11:6752767-6752998 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 185, 14 |
| Conread position: | 656-1032 |
| Cow position: | chr11:14191595-14191229 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 34 |
| Conread position: | 659-847 |
| Cow position: | chr11:25356022-25355835 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 57, 32 |
| Conread position: | 659-891 |
| Cow position: | chr11:45820889-45821125 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 659-1029 |
| Cow position: | chr11:2895049-2894692 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 182, 27 |
| Conread position: | 659-1032 |
| Cow position: | chr11:3612380-3612722 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 299, 29 |
| Conread position: | 661-890 |
| Cow position: | chr11:8557173-8557400 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 179, 27 |
| Conread position: | 661-904 |
| Cow position: | chr11:48074040-48074285 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 123, 43 |
| Conread position: | 662-870 |
| Cow position: | chr11:83086487-83086693 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 11, 37 |
| Conread position: | 675-977 |
| Cow position: | chr11:83551537-83551832 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 12 |
| Conread position: | 680-1032 |
| Cow position: | chr11:61469398-61469738 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 117, 8 |
| Conread position: | 682-879 |
| Cow position: | chr11:40582679-40582490 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 687-890 |
| Cow position: | chr11:58355579-58355778 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 153, 17 |
| Conread position: | 687-1024 |
| Cow position: | chr11:75129797-75129477 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 153, 17 |
| Conread position: | 687-1032 |
| Cow position: | chr11:12320804-12320466 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 19 |
| Conread position: | 687-1032 |
| Cow position: | chr11:59989466-59989123 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 246, 17 |
| Conread position: | 688-838 |
| Cow position: | chr11:47884891-47885040 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 689-870 |
| Cow position: | chr11:3743794-3743973 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 14 |
| Conread position: | 691-831 |
| Cow position: | chr11:19228201-19228342 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 691-1032 |
| Cow position: | chr11:63283158-63283481 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 11, 128 |
| Conread position: | 694-969 |
| Cow position: | chr11:79709808-79710082 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 29, 90 |
| Conread position: | 694-978 |
| Cow position: | chr11:50040507-50040778 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 28, 14 |
| Conread position: | 694-1017 |
| Cow position: | chr11:55183664-55183346 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 12 |
| Conread position: | 703-1032 |
| Cow position: | chr11:63667025-63667337 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 235 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 305, 15 |
| Conread position: | 714-1032 |
| Cow position: | chr11:45492421-45492746 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 94, 225 |
| Conread position: | 715-890 |
| Cow position: | chr11:30220300-30220478 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 715-1028 |
| Cow position: | chr11:31815987-31816284 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 125, 105 |
| Conread position: | 717-1028 |
| Cow position: | chr11:75202530-75202234 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 133, 94 |
| Conread position: | 718-889 |
| Cow position: | chr11:37724327-37724155 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 23, 46 |
| Conread position: | 718-890 |
| Cow position: | chr11:18139293-18139119 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 720-872 |
| Cow position: | chr11:37136604-37136751 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 120, 98 |
| Conread position: | 726-1032 |
| Cow position: | chr11:68237065-68236769 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 114, 37 |
| Conread position: | 727-1032 |
| Cow position: | chr11:8368858-8369157 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 55, 76 |
| Conread position: | 729-1031 |
| Cow position: | chr11:12167521-12167813 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 20 |
| Conread position: | 730-865 |
| Cow position: | chr11:48888970-48888834 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 738-868 |
| Cow position: | chr11:75167764-75167633 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 738-870 |
| Cow position: | chr11:2068845-2068971 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 740-1032 |
| Cow position: | chr11:52785854-52785579 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 100, 71 |
| Conread position: | 748-977 |
| Cow position: | chr11:66885836-66886079 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 119, 51 |
| Conread position: | 756-1032 |
| Cow position: | chr11:31348405-31348671 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 83, 118 |
| Conread position: | 804-978 |
| Cow position: | chr11:7066082-7065919 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 814-1024 |
| Cow position: | chr11:72074044-72074256 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 90, 28 |
| Conread position: | 845-1032 |
| Cow position: | chr11:15636052-15635867 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 146, 39 |
| Conread position: | 888-1032 |
| Cow position: | chr11:7475610-7475468 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 98, 15 |
Show alignments to all cow chromosomes.