Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056N24.5 |
| Conread position: | 597-844 |
| Cow position: | chr12:26549740-26549983 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 82, 33 |
| Conread position: | 600-838 |
| Cow position: | chr12:19202488-19202255 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 187, 19 |
| Conread position: | 605-974 |
| Cow position: | chr12:2006102-2005752 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 332, 45 |
| Conread position: | 616-796 |
| Cow position: | chr12:30978896-30979077 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 16 |
| Conread position: | 616-893 |
| Cow position: | chr12:16557000-16557277 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 90 |
| Conread position: | 631-1028 |
| Cow position: | chr12:41468378-41468006 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 280 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 50, 23 |
| Conread position: | 632-965 |
| Cow position: | chr12:46035198-46034875 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 46, 14 |
| Conread position: | 638-1027 |
| Cow position: | chr12:43992632-43993001 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 202, 22 |
| Conread position: | 642-1032 |
| Cow position: | chr12:45811415-45811808 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 21, 49 |
| Conread position: | 644-1032 |
| Cow position: | chr12:24333969-24334344 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 65 |
| Conread position: | 647-1032 |
| Cow position: | chr12:10878809-10878447 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 253 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 193, 13 |
| Conread position: | 655-870 |
| Cow position: | chr12:13158839-13158630 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 655-1032 |
| Cow position: | chr12:38589150-38589536 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 51 |
| Conread position: | 659-870 |
| Cow position: | chr12:7442816-7443025 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 659-870 |
| Cow position: | chr12:13153755-13153550 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 659-890 |
| Cow position: | chr12:42787221-42787450 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 187, 22 |
| Conread position: | 663-960 |
| Cow position: | chr12:48384658-48384375 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 217 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 219, 43 |
| Conread position: | 689-1032 |
| Cow position: | chr12:1664885-1664550 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 17 |
| Conread position: | 700-890 |
| Cow position: | chr12:21884753-21884935 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 171, 117 |
| Conread position: | 701-1032 |
| Cow position: | chr12:29863528-29863861 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 139 |
| Conread position: | 707-989 |
| Cow position: | chr12:37465896-37465626 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 709-847 |
| Cow position: | chr12:17334624-17334763 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 713-1032 |
| Cow position: | chr12:39122900-39123216 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 127, 72 |
| Conread position: | 725-1013 |
| Cow position: | chr12:4540218-4540498 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 160 |
| Conread position: | 725-1018 |
| Cow position: | chr12:40080323-40080605 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 145 |
| Conread position: | 737-989 |
| Cow position: | chr12:14548301-14548059 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 218, 80 |
| Conread position: | 738-990 |
| Cow position: | chr12:7923591-7923352 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 170, 104 |
| Conread position: | 739-1029 |
| Cow position: | chr12:32339354-32339066 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 216, 9 |
| Conread position: | 740-1023 |
| Cow position: | chr12:33040393-33040108 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 95, 142 |
| Conread position: | 744-1032 |
| Cow position: | chr12:3078897-3079177 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 188, 66 |
| Conread position: | 778-1015 |
| Cow position: | chr12:11199109-11199342 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 130, 101 |
| Conread position: | 888-1029 |
| Cow position: | chr12:26616547-26616687 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 120, 31 |
Show alignments to all cow chromosomes.