Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056N24.5 |
| Conread position: | 603-867 |
| Cow position: | chr13:10002929-10003190 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 78, 53 |
| Conread position: | 604-1032 |
| Cow position: | chr13:49625243-49624829 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 43 |
| Conread position: | 614-870 |
| Cow position: | chr13:49454181-49454435 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 59, 92 |
| Conread position: | 616-988 |
| Cow position: | chr13:60239912-60240263 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 40 |
| Conread position: | 619-987 |
| Cow position: | chr13:5610348-5610700 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 104, 35 |
| Conread position: | 621-857 |
| Cow position: | chr13:50784762-50784996 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 5, 98 |
| Conread position: | 626-870 |
| Cow position: | chr13:54346254-54346014 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 626-890 |
| Cow position: | chr13:18860481-18860220 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 220, 6 |
| Conread position: | 626-974 |
| Cow position: | chr13:52849557-52849894 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 121, 27 |
| Conread position: | 631-867 |
| Cow position: | chr13:50117264-50117495 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 26, 55 |
| Conread position: | 631-890 |
| Cow position: | chr13:14726666-14726407 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 209, 59 |
| Conread position: | 631-987 |
| Cow position: | chr13:52852341-52852000 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 23 |
| Conread position: | 631-1032 |
| Cow position: | chr13:34190017-34189630 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 92, 57 |
| Conread position: | 632-868 |
| Cow position: | chr13:24633403-24633637 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 171, 44 |
| Conread position: | 632-965 |
| Cow position: | chr13:22109095-22109409 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 172 |
| Conread position: | 632-965 |
| Cow position: | chr13:22169796-22170110 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 172 |
| Conread position: | 632-1032 |
| Cow position: | chr13:6063163-6063537 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 52, 13 |
| Conread position: | 635-1032 |
| Cow position: | chr13:26005046-26005427 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 12 |
| Conread position: | 639-866 |
| Cow position: | chr13:2780896-2780670 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 10, 41 |
| Conread position: | 644-989 |
| Cow position: | chr13:52184035-52184377 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 20 |
| Conread position: | 644-1032 |
| Cow position: | chr13:54409136-54409519 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 258 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 46, 65 |
| Conread position: | 645-1032 |
| Cow position: | chr13:30325056-30324672 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 45 |
| Conread position: | 650-1032 |
| Cow position: | chr13:17121573-17121207 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 263 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 66, 35 |
| Conread position: | 651-989 |
| Cow position: | chr13:13559672-13559362 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 307, 26 |
| Conread position: | 651-1032 |
| Cow position: | chr13:50787350-50786982 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 21, 31 |
| Conread position: | 655-931 |
| Cow position: | chr13:52328951-52328676 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 69 |
| Conread position: | 659-804 |
| Cow position: | chr13:20806522-20806665 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 659-868 |
| Cow position: | chr13:31488706-31488914 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 181, 29 |
| Conread position: | 659-890 |
| Cow position: | chr13:4802686-4802457 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 66, 20 |
| Conread position: | 660-870 |
| Cow position: | chr13:30335664-30335454 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 66, 28 |
| Conread position: | 661-916 |
| Cow position: | chr13:52693558-52693312 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 24, 46 |
| Conread position: | 662-838 |
| Cow position: | chr13:34872658-34872487 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 65, 44 |
| Conread position: | 681-1032 |
| Cow position: | chr13:15347882-15348230 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 38, 25 |
| Conread position: | 687-867 |
| Cow position: | chr13:14917768-14917588 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 687-1032 |
| Cow position: | chr13:42101883-42101548 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 46, 17 |
| Conread position: | 688-838 |
| Cow position: | chr13:19329122-19329272 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 28, 11 |
| Conread position: | 688-867 |
| Cow position: | chr13:15310428-15310603 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 158, 16 |
| Conread position: | 689-889 |
| Cow position: | chr13:41690845-41691040 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 185, 15 |
| Conread position: | 689-1032 |
| Cow position: | chr13:14574539-14574202 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 157, 15 |
| Conread position: | 690-890 |
| Cow position: | chr13:5249611-5249402 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 691-867 |
| Cow position: | chr13:31483132-31483309 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 17, 48 |
| Conread position: | 693-890 |
| Cow position: | chr13:54718547-54718742 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 178, 11 |
| Conread position: | 694-872 |
| Cow position: | chr13:43783930-43784108 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 28, 14 |
| Conread position: | 695-987 |
| Cow position: | chr13:47665692-47665406 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 66 |
| Conread position: | 695-1029 |
| Cow position: | chr13:17580948-17580623 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 185, 68 |
| Conread position: | 696-1032 |
| Cow position: | chr13:22108271-22108583 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 304, 13 |
| Conread position: | 699-889 |
| Cow position: | chr13:22169007-22169189 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 700-890 |
| Cow position: | chr13:42124301-42124490 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 31, 112 |
| Conread position: | 701-866 |
| Cow position: | chr13:722868-722703 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 704-1032 |
| Cow position: | chr13:14863736-14863423 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 229, 135 |
| Conread position: | 704-1032 |
| Cow position: | chr13:36820306-36820620 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 12, 170 |
| Conread position: | 709-862 |
| Cow position: | chr13:26324886-26324731 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 711-890 |
| Cow position: | chr13:50813475-50813656 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 128, 7 |
| Conread position: | 713-970 |
| Cow position: | chr13:5244961-5244718 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 127, 37 |
| Conread position: | 723-1028 |
| Cow position: | chr13:26935030-26935332 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 117, 95 |
| Conread position: | 726-890 |
| Cow position: | chr13:13800080-13800245 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 114, 106 |
| Conread position: | 738-1032 |
| Cow position: | chr13:8427624-8427342 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 102, 146 |
| Conread position: | 759-1032 |
| Cow position: | chr13:33006459-33006720 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 92, 114 |
| Conread position: | 805-994 |
| Cow position: | chr13:18894068-18893884 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 91, 62 |
| Conread position: | 859-1032 |
| Cow position: | chr13:22168068-22167896 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 25 |
| Conread position: | 874-1029 |
| Cow position: | chr13:33051064-33050914 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 106, 19 |
| Conread position: | 880-1028 |
| Cow position: | chr13:22107308-22107159 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 40 |
| Conread position: | 889-1028 |
| Cow position: | chr13:50785141-50785282 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 896-1032 |
| Cow position: | chr13:14024961-14025095 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 112, 9 |
Show alignments to all cow chromosomes.