Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056N24.5 |
| Conread position: | 221-548 |
| Cow position: | chr15:52823400-52823076 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 57 |
| Conread position: | 599-866 |
| Cow position: | chr15:22931357-22931085 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 54, 60 |
| Conread position: | 616-869 |
| Cow position: | chr15:30559641-30559894 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 75, 38 |
| Conread position: | 616-976 |
| Cow position: | chr15:14088523-14088861 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 23 |
| Conread position: | 618-824 |
| Cow position: | chr15:46340351-46340557 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 65, 111 |
| Conread position: | 619-1032 |
| Cow position: | chr15:23339534-23339145 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 298 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 63, 22 |
| Conread position: | 619-1032 |
| Cow position: | chr15:29274126-29273738 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 160 |
| Conread position: | 619-1032 |
| Cow position: | chr15:43655259-43654853 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 93 |
| Conread position: | 621-867 |
| Cow position: | chr15:22092929-22093170 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 225, 33 |
| Conread position: | 621-978 |
| Cow position: | chr15:39568661-39569016 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 631-815 |
| Cow position: | chr15:39802306-39802489 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 51 |
| Conread position: | 631-1032 |
| Cow position: | chr15:26624908-26624525 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 282 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 157, 23 |
| Conread position: | 639-890 |
| Cow position: | chr15:44902340-44902591 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 9, 72 |
| Conread position: | 643-870 |
| Cow position: | chr15:14494674-14494437 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 644-865 |
| Cow position: | chr15:34436565-34436340 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 45, 63 |
| Conread position: | 644-870 |
| Cow position: | chr15:30945508-30945282 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 79, 64 |
| Conread position: | 645-1028 |
| Cow position: | chr15:26133530-26133904 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 201, 24 |
| Conread position: | 646-1032 |
| Cow position: | chr15:22336770-22337154 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 654-1032 |
| Cow position: | chr15:52822994-52822622 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 36 |
| Conread position: | 658-890 |
| Cow position: | chr15:11677025-11676791 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 58, 30 |
| Conread position: | 660-838 |
| Cow position: | chr15:18638748-18638927 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 43, 30 |
| Conread position: | 660-857 |
| Cow position: | chr15:29596774-29596577 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 56, 28 |
| Conread position: | 660-1032 |
| Cow position: | chr15:6654055-6653689 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 50 |
| Conread position: | 661-870 |
| Cow position: | chr15:5001023-5000819 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 7, 45 |
| Conread position: | 663-1029 |
| Cow position: | chr15:9369786-9370143 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 45, 156 |
| Conread position: | 669-1032 |
| Cow position: | chr15:11730410-11730074 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 689-890 |
| Cow position: | chr15:1037054-1036853 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 18 |
| Conread position: | 689-893 |
| Cow position: | chr15:26304700-26304506 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 691-916 |
| Cow position: | chr15:42288996-42288769 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 192 |
| Conread position: | 698-973 |
| Cow position: | chr15:14219256-14218994 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 150, 42 |
| Conread position: | 710-1016 |
| Cow position: | chr15:233345-233025 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 221 |
| Conread position: | 712-943 |
| Cow position: | chr15:22486237-22486467 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 12, 74 |
| Conread position: | 720-870 |
| Cow position: | chr15:16444552-16444703 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 727-977 |
| Cow position: | chr15:14861618-14861850 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 5, 30 |
| Conread position: | 727-1029 |
| Cow position: | chr15:44999729-45000023 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 204, 21 |
| Conread position: | 728-1016 |
| Cow position: | chr15:42257076-42257348 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 209, 155 |
| Conread position: | 730-870 |
| Cow position: | chr15:44962871-44963010 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 110, 74 |
| Conread position: | 737-991 |
| Cow position: | chr15:28614602-28614364 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 191 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 737-1026 |
| Cow position: | chr15:29539727-29540014 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 67, 11 |
| Conread position: | 742-1032 |
| Cow position: | chr15:33849392-33849667 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 97, 75 |
| Conread position: | 745-1029 |
| Cow position: | chr15:10816256-10816001 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 33, 56 |
| Conread position: | 753-1032 |
| Cow position: | chr15:41208149-41208414 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 180, 87 |
| Conread position: | 758-1032 |
| Cow position: | chr15:40490302-40490574 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 88, 144 |
| Conread position: | 763-891 |
| Cow position: | chr15:25075948-25076077 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 798-989 |
| Cow position: | chr15:44965458-44965263 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 126 |
Show alignments to all cow chromosomes.