Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056N24.5 |
| Conread position: | 572-868 |
| Cow position: | chr16:10629405-10629703 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 66, 15 |
| Conread position: | 575-862 |
| Cow position: | chr16:11166533-11166827 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 618-1032 |
| Cow position: | chr16:27275185-27274790 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 293 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 14, 37 |
| Conread position: | 620-1032 |
| Cow position: | chr16:31133164-31133578 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 30 |
| Conread position: | 621-861 |
| Cow position: | chr16:53617627-53617394 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 121, 31 |
| Conread position: | 621-1028 |
| Cow position: | chr16:40516675-40516293 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 33 |
| Conread position: | 621-1029 |
| Cow position: | chr16:18054402-18054799 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 621-1032 |
| Cow position: | chr16:17749592-17749183 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 626-890 |
| Cow position: | chr16:24173817-24173553 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 140, 34 |
| Conread position: | 626-898 |
| Cow position: | chr16:39021046-39021316 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 214, 34 |
| Conread position: | 627-825 |
| Cow position: | chr16:228656-228854 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 58, 29 |
| Conread position: | 627-878 |
| Cow position: | chr16:4614398-4614646 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 632-838 |
| Cow position: | chr16:23846737-23846539 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 632-989 |
| Cow position: | chr16:21558027-21558371 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 91, 25 |
| Conread position: | 632-1032 |
| Cow position: | chr16:13925096-13924703 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 22 |
| Conread position: | 637-1026 |
| Cow position: | chr16:15682332-15681973 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 352, 110 |
| Conread position: | 640-838 |
| Cow position: | chr16:29661306-29661504 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 66, 46 |
| Conread position: | 648-890 |
| Cow position: | chr16:3850676-3850428 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 37, 74 |
| Conread position: | 653-978 |
| Cow position: | chr16:15669207-15668899 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 32, 53 |
| Conread position: | 654-1029 |
| Cow position: | chr16:56078706-56079067 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 23, 55 |
| Conread position: | 658-870 |
| Cow position: | chr16:56975794-56975584 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 71, 28 |
| Conread position: | 659-838 |
| Cow position: | chr16:52775618-52775443 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 57, 31 |
| Conread position: | 659-863 |
| Cow position: | chr16:27174445-27174234 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 44, 29 |
| Conread position: | 659-867 |
| Cow position: | chr16:40507549-40507345 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 181, 31 |
| Conread position: | 659-870 |
| Cow position: | chr16:5651157-5651369 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 659-1032 |
| Cow position: | chr16:37225714-37225356 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 181, 29 |
| Conread position: | 660-838 |
| Cow position: | chr16:45133055-45132874 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 660-874 |
| Cow position: | chr16:13497259-13497043 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 687-878 |
| Cow position: | chr16:2249868-2250057 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 153, 21 |
| Conread position: | 687-890 |
| Cow position: | chr16:15433801-15434005 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 153, 17 |
| Conread position: | 688-989 |
| Cow position: | chr16:33644374-33644087 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 37, 20 |
| Conread position: | 688-1032 |
| Cow position: | chr16:34613863-34614195 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 26, 80 |
| Conread position: | 689-890 |
| Cow position: | chr16:4396526-4396734 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 690-1032 |
| Cow position: | chr16:23948092-23948418 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 245, 14 |
| Conread position: | 694-843 |
| Cow position: | chr16:35280693-35280839 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 694-1032 |
| Cow position: | chr16:54014715-54015033 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 301, 12 |
| Conread position: | 701-1032 |
| Cow position: | chr16:29626362-29626044 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 67 |
| Conread position: | 702-893 |
| Cow position: | chr16:21979980-21979786 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 14, 116 |
| Conread position: | 702-1032 |
| Cow position: | chr16:40122022-40122355 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 17, 197 |
| Conread position: | 706-834 |
| Cow position: | chr16:56202631-56202760 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 707-866 |
| Cow position: | chr16:48889924-48889764 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 708-1029 |
| Cow position: | chr16:31531133-31531441 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 132, 9 |
| Conread position: | 708-1032 |
| Cow position: | chr16:16599886-16600198 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 132, 165 |
| Conread position: | 709-1032 |
| Cow position: | chr16:53198433-53198125 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 7, 17 |
| Conread position: | 713-870 |
| Cow position: | chr16:30829653-30829496 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 134, 23 |
| Conread position: | 718-1032 |
| Cow position: | chr16:40128599-40128915 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 175 |
| Conread position: | 720-870 |
| Cow position: | chr16:13109068-13108922 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 725-1032 |
| Cow position: | chr16:53753639-53753327 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 50, 73 |
| Conread position: | 726-890 |
| Cow position: | chr16:122671-122508 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 727-1032 |
| Cow position: | chr16:33907066-33906752 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 159, 145 |
| Conread position: | 732-865 |
| Cow position: | chr16:30577543-30577409 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 6, 63 |
| Conread position: | 734-1032 |
| Cow position: | chr16:33871971-33872264 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 278, 133 |
| Conread position: | 735-1026 |
| Cow position: | chr16:4628722-4628439 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 82, 13 |
| Conread position: | 738-1016 |
| Cow position: | chr16:52864420-52864146 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 70, 141 |
| Conread position: | 757-1003 |
| Cow position: | chr16:49759860-49760102 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 88, 56 |
| Conread position: | 758-1032 |
| Cow position: | chr16:31529142-31529409 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 205 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 82, 109 |
| Conread position: | 787-1018 |
| Cow position: | chr16:16833861-16834086 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 168, 80 |
| Conread position: | 804-1026 |
| Cow position: | chr16:3889895-3890136 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 43, 134 |
| Conread position: | 835-1032 |
| Cow position: | chr16:11167953-11168158 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 5, 91 |
| Conread position: | 892-1032 |
| Cow position: | chr16:4614873-4615011 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
Show alignments to all cow chromosomes.