Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056N24.5 |
| Conread position: | 603-890 |
| Cow position: | chr17:3435045-3435329 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 93, 46 |
| Conread position: | 616-1032 |
| Cow position: | chr17:9086241-9086645 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 75, 38 |
| Conread position: | 619-1017 |
| Cow position: | chr17:33196578-33196180 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 34 |
| Conread position: | 621-809 |
| Cow position: | chr17:26656323-26656134 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 70, 27 |
| Conread position: | 621-978 |
| Cow position: | chr17:25503873-25504216 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 626-987 |
| Cow position: | chr17:21851366-21851006 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 28 |
| Conread position: | 631-976 |
| Cow position: | chr17:35251635-35251305 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 23 |
| Conread position: | 631-1032 |
| Cow position: | chr17:23783928-23783542 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 209, 23 |
| Conread position: | 636-1032 |
| Cow position: | chr17:3829712-3830097 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 67, 24 |
| Conread position: | 640-878 |
| Cow position: | chr17:22808807-22808569 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 83, 68 |
| Conread position: | 646-838 |
| Cow position: | chr17:43261909-43262098 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 648-860 |
| Cow position: | chr17:4692-4480 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 75, 60 |
| Conread position: | 654-865 |
| Cow position: | chr17:21898323-21898535 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 36, 56 |
| Conread position: | 657-967 |
| Cow position: | chr17:22470342-22470047 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 659-838 |
| Cow position: | chr17:10639645-10639822 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 659-870 |
| Cow position: | chr17:16358565-16358776 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 8, 26 |
| Conread position: | 659-878 |
| Cow position: | chr17:45883547-45883763 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 10, 24 |
| Conread position: | 659-890 |
| Cow position: | chr17:33985468-33985238 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 187, 25 |
| Conread position: | 659-1032 |
| Cow position: | chr17:25544960-25545335 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 665-845 |
| Cow position: | chr17:1777056-1777230 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 665-960 |
| Cow position: | chr17:21840075-21840372 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 42 |
| Conread position: | 680-890 |
| Cow position: | chr17:26654517-26654729 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 22, 8 |
| Conread position: | 688-885 |
| Cow position: | chr17:8303591-8303786 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 689-943 |
| Cow position: | chr17:15525170-15525426 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 8, 122 |
| Conread position: | 693-864 |
| Cow position: | chr17:24586427-24586257 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 694-989 |
| Cow position: | chr17:22463907-22463638 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 694-1032 |
| Cow position: | chr17:33190274-33190626 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 53, 200 |
| Conread position: | 695-987 |
| Cow position: | chr17:27593196-27593474 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 156, 187 |
| Conread position: | 695-1032 |
| Cow position: | chr17:24004681-24004993 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 13 |
| Conread position: | 695-1032 |
| Cow position: | chr17:41715360-41715685 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 90, 23 |
| Conread position: | 699-989 |
| Cow position: | chr17:19004918-19004620 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 92, 24 |
| Conread position: | 699-1032 |
| Cow position: | chr17:3836493-3836819 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 702-837 |
| Cow position: | chr17:24995434-24995297 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 702-838 |
| Cow position: | chr17:6202818-6202951 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 705-991 |
| Cow position: | chr17:5402-5131 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 23 |
| Conread position: | 710-1032 |
| Cow position: | chr17:36038768-36039081 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 6, 183 |
| Conread position: | 722-870 |
| Cow position: | chr17:21905359-21905211 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 84, 16 |
| Conread position: | 724-1015 |
| Cow position: | chr17:17297887-17298170 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 14 |
| Conread position: | 725-1025 |
| Cow position: | chr17:4187113-4187408 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 54 |
| Conread position: | 727-864 |
| Cow position: | chr17:37710693-37710831 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 735-865 |
| Cow position: | chr17:16952902-16952773 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 742-989 |
| Cow position: | chr17:22835203-22835432 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 98, 62 |
| Conread position: | 742-1032 |
| Cow position: | chr17:1101255-1101532 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 104, 52 |
| Conread position: | 747-978 |
| Cow position: | chr17:17073392-17073617 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 120, 129 |
| Conread position: | 748-865 |
| Cow position: | chr17:37707678-37707795 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 760-1028 |
| Cow position: | chr17:17938788-17939042 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 805-959 |
| Cow position: | chr17:21840389-21840545 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 70, 37 |
Show alignments to all cow chromosomes.