Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056N24.5 |
| Conread position: | 604-993 |
| Cow position: | chr18:44215008-44215402 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 139 |
| Conread position: | 605-973 |
| Cow position: | chr18:42734997-42735345 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 77, 49 |
| Conread position: | 616-937 |
| Cow position: | chr18:32401250-32401560 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 37 |
| Conread position: | 616-1032 |
| Cow position: | chr18:21737438-21737031 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 619-1032 |
| Cow position: | chr18:49646892-49646491 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 72 |
| Conread position: | 628-970 |
| Cow position: | chr18:32395947-32396289 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 631-871 |
| Cow position: | chr18:52708495-52708731 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 209, 45 |
| Conread position: | 631-890 |
| Cow position: | chr18:55146128-55145870 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 85, 29 |
| Conread position: | 631-1032 |
| Cow position: | chr18:52707431-52707046 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 274 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 45, 54 |
| Conread position: | 632-1028 |
| Cow position: | chr18:37762003-37762379 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 47, 16 |
| Conread position: | 643-1032 |
| Cow position: | chr18:52393377-52392995 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 232 |
| Conread position: | 647-989 |
| Cow position: | chr18:31955065-31954724 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 25, 13 |
| Conread position: | 648-862 |
| Cow position: | chr18:48004435-48004651 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 41, 61 |
| Conread position: | 659-834 |
| Cow position: | chr18:1707953-1707779 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 27, 46 |
| Conread position: | 659-891 |
| Cow position: | chr18:24796145-24796381 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 659-945 |
| Cow position: | chr18:14139880-14140151 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 17, 50 |
| Conread position: | 662-1029 |
| Cow position: | chr18:17234076-17234434 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 136 |
| Conread position: | 666-1030 |
| Cow position: | chr18:43243526-43243880 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 180, 38 |
| Conread position: | 674-1032 |
| Cow position: | chr18:8691729-8691380 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 690-945 |
| Cow position: | chr18:51389383-51389141 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 42 |
| Conread position: | 694-834 |
| Cow position: | chr18:25088813-25088948 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 694-838 |
| Cow position: | chr18:30979193-30979048 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 694-1032 |
| Cow position: | chr18:8340958-8340636 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 134, 14 |
| Conread position: | 699-887 |
| Cow position: | chr18:880385-880574 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 20, 48 |
| Conread position: | 700-890 |
| Cow position: | chr18:25086389-25086580 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 39, 25 |
| Conread position: | 707-870 |
| Cow position: | chr18:38308875-38308707 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 714-1032 |
| Cow position: | chr18:17220973-17220652 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 126, 191 |
| Conread position: | 714-1032 |
| Cow position: | chr18:17235621-17235300 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 126, 191 |
| Conread position: | 725-987 |
| Cow position: | chr18:22418731-22418990 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 156 |
| Conread position: | 725-1018 |
| Cow position: | chr18:16064727-16065003 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 217 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 272, 115 |
| Conread position: | 725-1019 |
| Cow position: | chr18:47987443-47987136 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 730-1032 |
| Cow position: | chr18:4480808-4481099 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 62, 143 |
| Conread position: | 732-1032 |
| Cow position: | chr18:16071711-16072001 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 119, 139 |
| Conread position: | 733-1029 |
| Cow position: | chr18:21617874-21617573 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 106, 57 |
| Conread position: | 737-991 |
| Cow position: | chr18:42808917-42808672 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 738-882 |
| Cow position: | chr18:7111691-7111834 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 756-1029 |
| Cow position: | chr18:27827767-27828028 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 7, 97 |
| Conread position: | 774-1032 |
| Cow position: | chr18:4471852-4472103 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 72, 110 |
| Conread position: | 790-1032 |
| Cow position: | chr18:37708404-37708171 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 56, 84 |
| Conread position: | 804-1032 |
| Cow position: | chr18:46163952-46163715 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 77 |
Show alignments to all cow chromosomes.