Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056N24.5 |
| Conread position: | 578-1032 |
| Cow position: | chr2:48070824-48071263 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 9 |
| Conread position: | 600-891 |
| Cow position: | chr2:77715114-77715400 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 86, 54 |
| Conread position: | 604-1025 |
| Cow position: | chr2:59163610-59164015 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 295 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 120, 15 |
| Conread position: | 615-1032 |
| Cow position: | chr2:2400735-2400333 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 60 |
| Conread position: | 616-781 |
| Cow position: | chr2:36883718-36883879 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 127 |
| Conread position: | 616-802 |
| Cow position: | chr2:19575421-19575608 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 616-1030 |
| Cow position: | chr2:66454917-66454486 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 48 |
| Conread position: | 616-1032 |
| Cow position: | chr2:19063392-19063788 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 38 |
| Conread position: | 616-1032 |
| Cow position: | chr2:73751155-73750750 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 117 |
| Conread position: | 619-1032 |
| Cow position: | chr2:376644-377045 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 280 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 149, 35 |
| Conread position: | 621-828 |
| Cow position: | chr2:18448898-18448693 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 28, 40 |
| Conread position: | 621-870 |
| Cow position: | chr2:12855044-12854797 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 219, 33 |
| Conread position: | 621-977 |
| Cow position: | chr2:74308313-74307981 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 257 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 183, 33 |
| Conread position: | 625-991 |
| Cow position: | chr2:74811063-74811431 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 23 |
| Conread position: | 626-809 |
| Cow position: | chr2:46307847-46307666 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 57, 22 |
| Conread position: | 627-1032 |
| Cow position: | chr2:39548636-39549029 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 104 |
| Conread position: | 631-1032 |
| Cow position: | chr2:19150084-19150468 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 22 |
| Conread position: | 631-1032 |
| Cow position: | chr2:36951560-36951973 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 635-1032 |
| Cow position: | chr2:46490458-46490071 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 640-866 |
| Cow position: | chr2:856816-856591 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 9, 65 |
| Conread position: | 642-867 |
| Cow position: | chr2:57995735-57995953 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 86, 48 |
| Conread position: | 643-807 |
| Cow position: | chr2:23648391-23648227 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 66 |
| Conread position: | 644-829 |
| Cow position: | chr2:42265074-42264889 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 79, 64 |
| Conread position: | 647-1025 |
| Cow position: | chr2:81130178-81129813 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 69, 15 |
| Conread position: | 648-1032 |
| Cow position: | chr2:18089053-18088651 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 272 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 40, 232 |
| Conread position: | 654-890 |
| Cow position: | chr2:74694890-74694651 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 32, 51 |
| Conread position: | 654-1032 |
| Cow position: | chr2:46258219-46258587 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 36 |
| Conread position: | 654-1032 |
| Cow position: | chr2:55407405-55407053 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 42, 36 |
| Conread position: | 656-1032 |
| Cow position: | chr2:37052670-37052276 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 20 |
| Conread position: | 659-889 |
| Cow position: | chr2:74482381-74482151 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 17, 23 |
| Conread position: | 659-890 |
| Cow position: | chr2:64175217-64174987 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 659-1028 |
| Cow position: | chr2:42190730-42191085 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 181, 15 |
| Conread position: | 659-1032 |
| Cow position: | chr2:15339697-15339340 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 181, 29 |
| Conread position: | 659-1032 |
| Cow position: | chr2:27777033-27776672 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 30, 11 |
| Conread position: | 659-1032 |
| Cow position: | chr2:49862297-49861925 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 57, 32 |
| Conread position: | 660-806 |
| Cow position: | chr2:73168385-73168530 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 660-851 |
| Cow position: | chr2:46448076-46448270 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 107, 30 |
| Conread position: | 684-1032 |
| Cow position: | chr2:33512249-33512597 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 40 |
| Conread position: | 687-1032 |
| Cow position: | chr2:5327950-5327620 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 153, 17 |
| Conread position: | 688-890 |
| Cow position: | chr2:69640830-69641025 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 28, 16 |
| Conread position: | 688-1025 |
| Cow position: | chr2:13332355-13332030 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 689-889 |
| Cow position: | chr2:70177759-70177958 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 151, 19 |
| Conread position: | 689-987 |
| Cow position: | chr2:69924098-69924381 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 17 |
| Conread position: | 689-1032 |
| Cow position: | chr2:29450708-29450375 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 235 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 691-1032 |
| Cow position: | chr2:45113856-45113527 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 245 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 13, 182 |
| Conread position: | 694-1032 |
| Cow position: | chr2:33219079-33219402 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 146, 12 |
| Conread position: | 695-978 |
| Cow position: | chr2:70279365-70279097 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 208 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 145, 9 |
| Conread position: | 695-989 |
| Cow position: | chr2:36950920-36951192 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 151, 58 |
| Conread position: | 701-1032 |
| Cow position: | chr2:46277537-46277203 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 11 |
| Conread position: | 704-1032 |
| Cow position: | chr2:3713637-3713952 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 137, 169 |
| Conread position: | 707-878 |
| Cow position: | chr2:15335970-15335799 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 715-1028 |
| Cow position: | chr2:66339781-66339455 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 215 |
| Conread position: | 715-1032 |
| Cow position: | chr2:45690344-45690043 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 9, 167 |
| Conread position: | 719-1032 |
| Cow position: | chr2:65334682-65334381 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 127, 154 |
| Conread position: | 725-1023 |
| Cow position: | chr2:46398285-46398591 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 216 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 43, 251 |
| Conread position: | 725-1032 |
| Cow position: | chr2:38809251-38809547 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 53, 149 |
| Conread position: | 727-865 |
| Cow position: | chr2:12301824-12301685 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 114, 39 |
| Conread position: | 727-1032 |
| Cow position: | chr2:68702685-68702393 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 11, 155 |
| Conread position: | 734-865 |
| Cow position: | chr2:37107019-37107150 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 734-865 |
| Cow position: | chr2:46923408-46923538 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 734-1025 |
| Cow position: | chr2:64154834-64154555 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 90, 62 |
| Conread position: | 734-1029 |
| Cow position: | chr2:81756187-81756480 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 15 |
| Conread position: | 734-1032 |
| Cow position: | chr2:37096632-37096924 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 185, 104 |
| Conread position: | 735-986 |
| Cow position: | chr2:17347268-17347514 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 162, 13 |
| Conread position: | 740-865 |
| Cow position: | chr2:27379818-27379692 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 66, 105 |
| Conread position: | 744-865 |
| Cow position: | chr2:19709675-19709796 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 748-969 |
| Cow position: | chr2:21725013-21724792 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 137, 31 |
Show alignments to all cow chromosomes.