Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056N24.5 |
| Conread position: | 589-870 |
| Cow position: | chr21:41140301-41140020 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 53, 82 |
| Conread position: | 621-978 |
| Cow position: | chr21:41536119-41535769 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 102, 35 |
| Conread position: | 621-1006 |
| Cow position: | chr21:32919774-32920154 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 35 |
| Conread position: | 628-924 |
| Cow position: | chr21:19671350-19671635 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 56 |
| Conread position: | 630-894 |
| Cow position: | chr21:48537952-48538214 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 210, 58 |
| Conread position: | 631-1032 |
| Cow position: | chr21:9015552-9015940 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 271 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 7, 30 |
| Conread position: | 631-1032 |
| Cow position: | chr21:13360918-13361302 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 631-1032 |
| Cow position: | chr21:32040540-32040160 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 208, 23 |
| Conread position: | 632-870 |
| Cow position: | chr21:2681707-2681944 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 17, 29 |
| Conread position: | 637-887 |
| Cow position: | chr21:44558904-44558655 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 639-870 |
| Cow position: | chr21:45811862-45811627 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 49, 21 |
| Conread position: | 641-870 |
| Cow position: | chr21:4809767-4809534 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 35, 80 |
| Conread position: | 644-860 |
| Cow position: | chr21:49689242-49689032 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 65 |
| Conread position: | 644-1030 |
| Cow position: | chr21:958273-958643 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 266 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 44, 66 |
| Conread position: | 645-1032 |
| Cow position: | chr21:42074915-42074539 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 36, 15 |
| Conread position: | 647-890 |
| Cow position: | chr21:19572698-19572935 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 224, 13 |
| Conread position: | 647-1032 |
| Cow position: | chr21:6606295-6605921 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 652-1028 |
| Cow position: | chr21:7075144-7075509 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 169, 26 |
| Conread position: | 654-890 |
| Cow position: | chr21:36008322-36008551 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 22, 52 |
| Conread position: | 655-878 |
| Cow position: | chr21:8941479-8941259 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 185, 53 |
| Conread position: | 658-1028 |
| Cow position: | chr21:12410139-12410491 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 257 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 182, 30 |
| Conread position: | 658-1032 |
| Cow position: | chr21:20785084-20785461 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 659-838 |
| Cow position: | chr21:14685925-14685744 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 659-844 |
| Cow position: | chr21:18540623-18540806 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 64, 29 |
| Conread position: | 659-870 |
| Cow position: | chr21:14681766-14681971 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 116, 19 |
| Conread position: | 659-1028 |
| Cow position: | chr21:9199790-9200150 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 255 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 71, 29 |
| Conread position: | 659-1032 |
| Cow position: | chr21:18468977-18468616 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 660-801 |
| Cow position: | chr21:19934160-19934302 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 680-890 |
| Cow position: | chr21:49690891-49691099 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 34, 8 |
| Conread position: | 687-990 |
| Cow position: | chr21:35744196-35743893 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 208 |
| Conread position: | 687-1032 |
| Cow position: | chr21:2832755-2832419 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 27, 17 |
| Conread position: | 688-816 |
| Cow position: | chr21:22162737-22162864 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 689-890 |
| Cow position: | chr21:37708130-37707927 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 689-1032 |
| Cow position: | chr21:30926107-30925785 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 690-870 |
| Cow position: | chr21:9013767-9013946 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 692-1032 |
| Cow position: | chr21:37260578-37260249 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 47 |
| Conread position: | 693-1029 |
| Cow position: | chr21:10275641-10275961 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 89, 11 |
| Conread position: | 694-1032 |
| Cow position: | chr21:7096113-7096441 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 147, 14 |
| Conread position: | 694-1032 |
| Cow position: | chr21:35555542-35555858 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 695-978 |
| Cow position: | chr21:372808-372540 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 152, 125 |
| Conread position: | 700-845 |
| Cow position: | chr21:17788731-17788874 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 701-991 |
| Cow position: | chr21:32401627-32401912 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 122, 143 |
| Conread position: | 702-806 |
| Cow position: | chr21:8610096-8610201 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 86 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 702-870 |
| Cow position: | chr21:40698206-40698377 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 702-890 |
| Cow position: | chr21:17205784-17205976 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 702-890 |
| Cow position: | chr21:35306535-35306343 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 124 |
| Conread position: | 710-870 |
| Cow position: | chr21:39145243-39145406 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 718-871 |
| Cow position: | chr21:12647410-12647561 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 133, 113 |
| Conread position: | 718-890 |
| Cow position: | chr21:37348780-37348605 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 718-1025 |
| Cow position: | chr21:25335520-25335226 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 217, 83 |
| Conread position: | 722-1032 |
| Cow position: | chr21:39256120-39255811 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 118, 82 |
| Conread position: | 724-977 |
| Cow position: | chr21:25144131-25144384 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 17, 145 |
| Conread position: | 734-853 |
| Cow position: | chr21:17085511-17085395 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 737-890 |
| Cow position: | chr21:33270407-33270561 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 103, 9 |
| Conread position: | 738-890 |
| Cow position: | chr21:1567459-1567613 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 741-1028 |
| Cow position: | chr21:36210617-36210338 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 163, 122 |
| Conread position: | 741-1032 |
| Cow position: | chr21:32460014-32459729 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 62 |
| Conread position: | 747-967 |
| Cow position: | chr21:25564671-25564889 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 89, 121 |
Show alignments to all cow chromosomes.