Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056N24.5 |
| Conread position: | 616-797 |
| Cow position: | chr23:36440097-36439920 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 108, 38 |
| Conread position: | 616-892 |
| Cow position: | chr23:22294552-22294276 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 108 |
| Conread position: | 616-978 |
| Cow position: | chr23:33993797-33993432 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 616-984 |
| Cow position: | chr23:22305115-22305470 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 22 |
| Conread position: | 616-1024 |
| Cow position: | chr23:20286241-20285827 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 296 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 9, 18 |
| Conread position: | 621-865 |
| Cow position: | chr23:22331547-22331305 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 24, 34 |
| Conread position: | 631-864 |
| Cow position: | chr23:30589285-30589053 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 631-890 |
| Cow position: | chr23:7527472-7527214 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 18, 30 |
| Conread position: | 631-1032 |
| Cow position: | chr23:18568609-18568217 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 23 |
| Conread position: | 631-1032 |
| Cow position: | chr23:26343477-26343075 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 84, 59 |
| Conread position: | 633-1027 |
| Cow position: | chr23:5219715-5220094 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 265 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 63, 19 |
| Conread position: | 635-1032 |
| Cow position: | chr23:6303569-6303945 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 273 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 37, 11 |
| Conread position: | 639-1032 |
| Cow position: | chr23:596526-596904 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 271 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 293, 47 |
| Conread position: | 640-890 |
| Cow position: | chr23:12980566-12980319 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 72 |
| Conread position: | 640-1032 |
| Cow position: | chr23:12972584-12972209 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 44 |
| Conread position: | 644-870 |
| Cow position: | chr23:1899793-1899562 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 40, 18 |
| Conread position: | 644-961 |
| Cow position: | chr23:1280371-1280684 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 13, 74 |
| Conread position: | 645-791 |
| Cow position: | chr23:31086063-31086208 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 648-1026 |
| Cow position: | chr23:19788853-19788471 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 48, 40 |
| Conread position: | 648-1029 |
| Cow position: | chr23:35164826-35164464 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 262 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 290, 12 |
| Conread position: | 655-1028 |
| Cow position: | chr23:19840868-19841226 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 263 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 68, 29 |
| Conread position: | 659-857 |
| Cow position: | chr23:3536323-3536127 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 659-870 |
| Cow position: | chr23:6048636-6048425 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 57, 22 |
| Conread position: | 659-1032 |
| Cow position: | chr23:23877631-23877264 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 659-1032 |
| Cow position: | chr23:27918349-27918709 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 659-1032 |
| Cow position: | chr23:28882244-28882600 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 10, 50 |
| Conread position: | 660-837 |
| Cow position: | chr23:20246240-20246062 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 56, 28 |
| Conread position: | 661-890 |
| Cow position: | chr23:36437257-36437488 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 27, 48 |
| Conread position: | 680-1032 |
| Cow position: | chr23:27979-27635 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 23, 165 |
| Conread position: | 687-870 |
| Cow position: | chr23:4651897-4652078 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 153, 21 |
| Conread position: | 693-1032 |
| Cow position: | chr23:18243749-18244076 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 211, 15 |
| Conread position: | 694-897 |
| Cow position: | chr23:26590894-26591098 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 164 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 119, 12 |
| Conread position: | 695-1032 |
| Cow position: | chr23:664822-665150 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 702-1019 |
| Cow position: | chr23:14741184-14740880 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 20, 140 |
| Conread position: | 725-870 |
| Cow position: | chr23:9637262-9637403 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 738-865 |
| Cow position: | chr23:25649447-25649319 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 738-1029 |
| Cow position: | chr23:595369-595647 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 102, 144 |
Show alignments to all cow chromosomes.