Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056N24.5 |
| Conread position: | 599-1028 |
| Cow position: | chr29:39420324-39419878 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 55 |
| Conread position: | 616-1008 |
| Cow position: | chr29:27061201-27060816 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 274 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 243, 74 |
| Conread position: | 617-969 |
| Cow position: | chr29:1762029-1761692 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 621-1032 |
| Cow position: | chr29:27058493-27058101 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 33 |
| Conread position: | 622-851 |
| Cow position: | chr29:26524305-26524526 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 101, 32 |
| Conread position: | 627-1032 |
| Cow position: | chr29:40566878-40567271 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 27 |
| Conread position: | 631-838 |
| Cow position: | chr29:11973326-11973120 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 10, 58 |
| Conread position: | 631-838 |
| Cow position: | chr29:21306601-21306806 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 17, 23 |
| Conread position: | 631-870 |
| Cow position: | chr29:40632620-40632852 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 631-870 |
| Cow position: | chr29:40874712-40874477 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 65, 23 |
| Conread position: | 631-1032 |
| Cow position: | chr29:38263190-38262801 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 284 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 24, 11 |
| Conread position: | 639-890 |
| Cow position: | chr29:29128876-29128626 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 201, 49 |
| Conread position: | 639-1032 |
| Cow position: | chr29:8849719-8849338 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 21, 52 |
| Conread position: | 640-890 |
| Cow position: | chr29:13500499-13500741 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 640-1032 |
| Cow position: | chr29:20049896-20049510 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 20, 51 |
| Conread position: | 644-1032 |
| Cow position: | chr29:1446942-1447317 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 30, 69 |
| Conread position: | 644-1032 |
| Cow position: | chr29:10626114-10625737 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 64 |
| Conread position: | 647-890 |
| Cow position: | chr29:1900460-1900692 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 225, 13 |
| Conread position: | 659-870 |
| Cow position: | chr29:29637730-29637520 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 161, 19 |
| Conread position: | 659-890 |
| Cow position: | chr29:24801631-24801863 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 659-890 |
| Cow position: | chr29:32204141-32203906 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 24, 14 |
| Conread position: | 660-818 |
| Cow position: | chr29:42904824-42904984 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 47 |
| Conread position: | 661-890 |
| Cow position: | chr29:23134096-23133871 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 180, 27 |
| Conread position: | 661-1032 |
| Cow position: | chr29:39532555-39532192 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 669-989 |
| Cow position: | chr29:43153280-43152972 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 22, 90 |
| Conread position: | 688-891 |
| Cow position: | chr29:24506911-24506703 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 120, 16 |
| Conread position: | 688-1016 |
| Cow position: | chr29:312997-313310 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 24 |
| Conread position: | 689-811 |
| Cow position: | chr29:2540821-2540942 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 691-890 |
| Cow position: | chr29:29455702-29455903 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 691-989 |
| Cow position: | chr29:30722140-30721850 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 702-870 |
| Cow position: | chr29:16431347-16431517 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 5, 16 |
| Conread position: | 702-870 |
| Cow position: | chr29:34090251-34090080 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 704-870 |
| Cow position: | chr29:11360807-11360975 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 711-1029 |
| Cow position: | chr29:18444820-18445120 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 74, 94 |
| Conread position: | 718-988 |
| Cow position: | chr29:24704147-24704419 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 41, 114 |
| Conread position: | 722-1028 |
| Cow position: | chr29:6743833-6744126 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 118, 151 |
| Conread position: | 725-1029 |
| Cow position: | chr29:14938704-14938395 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 119, 53 |
| Conread position: | 734-1018 |
| Cow position: | chr29:40098358-40098079 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 221, 16 |
| Conread position: | 745-1032 |
| Cow position: | chr29:31177299-31177574 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 71, 129 |
Show alignments to all cow chromosomes.