Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056N24.5 |
| Conread position: | 572-1032 |
| Cow position: | chr3:63151515-63151973 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 14 |
| Conread position: | 604-895 |
| Cow position: | chr3:53911111-53910822 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 116, 44 |
| Conread position: | 616-754 |
| Cow position: | chr3:2256136-2256273 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 616-991 |
| Cow position: | chr3:48920194-48920600 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 63 |
| Conread position: | 619-791 |
| Cow position: | chr3:6736471-6736302 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 619-943 |
| Cow position: | chr3:8435295-8435610 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 139 |
| Conread position: | 619-1032 |
| Cow position: | chr3:63998425-63998022 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 13 |
| Conread position: | 621-1032 |
| Cow position: | chr3:11951944-11952346 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 33 |
| Conread position: | 628-970 |
| Cow position: | chr3:39226567-39226914 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 26 |
| Conread position: | 631-963 |
| Cow position: | chr3:83459179-83458862 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 246 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 91, 22 |
| Conread position: | 631-1028 |
| Cow position: | chr3:39403408-39403799 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 72, 45 |
| Conread position: | 634-870 |
| Cow position: | chr3:69279719-69279956 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 84, 13 |
| Conread position: | 635-807 |
| Cow position: | chr3:67828496-67828668 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 111, 122 |
| Conread position: | 635-818 |
| Cow position: | chr3:83980508-83980685 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 19 |
| Conread position: | 639-866 |
| Cow position: | chr3:52608579-52608806 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 77, 21 |
| Conread position: | 644-867 |
| Cow position: | chr3:3811732-3811953 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 59, 162 |
| Conread position: | 644-1029 |
| Cow position: | chr3:665469-665071 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 63 |
| Conread position: | 644-1032 |
| Cow position: | chr3:16574797-16574419 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 67 |
| Conread position: | 644-1032 |
| Cow position: | chr3:23178770-23178391 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 271 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 24, 67 |
| Conread position: | 645-1026 |
| Cow position: | chr3:8146699-8147069 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 17, 66 |
| Conread position: | 646-852 |
| Cow position: | chr3:28595488-28595680 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 646-1032 |
| Cow position: | chr3:44095533-44095166 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 16, 63 |
| Conread position: | 647-844 |
| Cow position: | chr3:83606031-83606226 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 69, 43 |
| Conread position: | 648-853 |
| Cow position: | chr3:53210476-53210683 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 36, 61 |
| Conread position: | 648-890 |
| Cow position: | chr3:25695748-25695505 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 35, 63 |
| Conread position: | 650-1029 |
| Cow position: | chr3:32578681-32579045 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 73, 66 |
| Conread position: | 654-989 |
| Cow position: | chr3:17615915-17615610 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 237 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 150, 26 |
| Conread position: | 659-838 |
| Cow position: | chr3:79142162-79141980 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 13 |
| Conread position: | 659-866 |
| Cow position: | chr3:14038685-14038890 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 181, 22 |
| Conread position: | 659-890 |
| Cow position: | chr3:45937177-45936950 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 659-890 |
| Cow position: | chr3:79070891-79071121 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 659-1032 |
| Cow position: | chr3:6591763-6591395 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 264 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 659-1032 |
| Cow position: | chr3:14184220-14184579 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 57, 31 |
| Conread position: | 659-1032 |
| Cow position: | chr3:72885022-72884657 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 660-838 |
| Cow position: | chr3:53211646-53211470 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 50 |
| Conread position: | 660-869 |
| Cow position: | chr3:78096343-78096146 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 668-1032 |
| Cow position: | chr3:31110515-31110162 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 152, 23 |
| Conread position: | 679-991 |
| Cow position: | chr3:9770560-9770273 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 230 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 127, 134 |
| Conread position: | 680-818 |
| Cow position: | chr3:6559047-6559180 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 687-1032 |
| Cow position: | chr3:32246305-32246637 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 153, 17 |
| Conread position: | 690-869 |
| Cow position: | chr3:6769763-6769944 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 16, 27 |
| Conread position: | 690-1029 |
| Cow position: | chr3:81222470-81222142 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 33, 18 |
| Conread position: | 694-1032 |
| Cow position: | chr3:75055655-75055967 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 275, 14 |
| Conread position: | 695-890 |
| Cow position: | chr3:44090483-44090677 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 28, 21 |
| Conread position: | 695-925 |
| Cow position: | chr3:73549283-73549053 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 718-890 |
| Cow position: | chr3:4332941-4333112 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 153, 122 |
| Conread position: | 720-1027 |
| Cow position: | chr3:14042965-14042666 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 96, 84 |
| Conread position: | 722-844 |
| Cow position: | chr3:67537521-67537643 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 722-1028 |
| Cow position: | chr3:21840084-21839777 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 182, 110 |
| Conread position: | 723-866 |
| Cow position: | chr3:80996543-80996688 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 725-870 |
| Cow position: | chr3:549007-549149 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 725-1032 |
| Cow position: | chr3:52851962-52852261 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 115 |
| Conread position: | 725-1032 |
| Cow position: | chr3:61961706-61962019 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 168, 159 |
| Conread position: | 729-1029 |
| Cow position: | chr3:24665525-24665815 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 115, 19 |
| Conread position: | 729-1032 |
| Cow position: | chr3:5455626-5455322 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 731-891 |
| Cow position: | chr3:47976105-47976265 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 731-1032 |
| Cow position: | chr3:7814435-7814151 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 46, 151 |
| Conread position: | 732-1032 |
| Cow position: | chr3:3795081-3794779 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 6, 57 |
| Conread position: | 733-1029 |
| Cow position: | chr3:71703796-71704098 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 138, 116 |
| Conread position: | 751-867 |
| Cow position: | chr3:58189809-58189926 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 757-890 |
| Cow position: | chr3:65535068-65534933 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 761-1026 |
| Cow position: | chr3:23187430-23187152 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 50, 136 |
| Conread position: | 762-1015 |
| Cow position: | chr3:2256304-2256552 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 218, 86 |
| Conread position: | 791-1032 |
| Cow position: | chr3:16789031-16788791 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 117, 78 |
| Conread position: | 805-1028 |
| Cow position: | chr3:67828902-67829110 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 192, 76 |
Show alignments to all cow chromosomes.