Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056N24.5 |
| Conread position: | 572-1032 |
| Cow position: | chr5:20840709-20840262 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 45 |
| Conread position: | 604-838 |
| Cow position: | chr5:9328966-9328743 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 604-1032 |
| Cow position: | chr5:63395233-63395654 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 43 |
| Conread position: | 616-809 |
| Cow position: | chr5:767256-767061 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 69, 97 |
| Conread position: | 616-893 |
| Cow position: | chr5:60922469-60922195 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 80, 38 |
| Conread position: | 616-1032 |
| Cow position: | chr5:43087446-43087024 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 38 |
| Conread position: | 618-1032 |
| Cow position: | chr5:3396827-3396424 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 36 |
| Conread position: | 619-897 |
| Cow position: | chr5:9520597-9520327 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 620-871 |
| Cow position: | chr5:63078550-63078307 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 621-864 |
| Cow position: | chr5:42709990-42709759 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 219, 33 |
| Conread position: | 621-991 |
| Cow position: | chr5:45564922-45565285 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 32 |
| Conread position: | 621-1032 |
| Cow position: | chr5:59458074-59457668 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 32 |
| Conread position: | 627-1018 |
| Cow position: | chr5:75056094-75056476 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 630-989 |
| Cow position: | chr5:47768043-47767700 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 221, 58 |
| Conread position: | 631-810 |
| Cow position: | chr5:33922625-33922802 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 631-1029 |
| Cow position: | chr5:2188487-2188869 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 277 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 119, 23 |
| Conread position: | 636-1032 |
| Cow position: | chr5:59117721-59118104 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 40, 26 |
| Conread position: | 639-989 |
| Cow position: | chr5:34024773-34025105 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 201, 21 |
| Conread position: | 639-1032 |
| Cow position: | chr5:49879072-49879450 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 51 |
| Conread position: | 643-829 |
| Cow position: | chr5:57628637-57628824 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 33, 60 |
| Conread position: | 643-1032 |
| Cow position: | chr5:44697272-44696893 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 32, 63 |
| Conread position: | 644-830 |
| Cow position: | chr5:20848069-20848256 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 43, 66 |
| Conread position: | 648-989 |
| Cow position: | chr5:6390954-6390629 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 33, 62 |
| Conread position: | 648-992 |
| Cow position: | chr5:49609820-49610148 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 36, 51 |
| Conread position: | 648-1032 |
| Cow position: | chr5:16177427-16177062 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 59 |
| Conread position: | 651-989 |
| Cow position: | chr5:41330731-41330404 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 32, 58 |
| Conread position: | 655-837 |
| Cow position: | chr5:47836865-47837043 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 26, 91 |
| Conread position: | 656-865 |
| Cow position: | chr5:39323229-39323438 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 43 |
| Conread position: | 659-867 |
| Cow position: | chr5:73567048-73566840 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 659-868 |
| Cow position: | chr5:26464960-26464752 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 659-870 |
| Cow position: | chr5:25479154-25479367 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 12, 30 |
| Conread position: | 659-1028 |
| Cow position: | chr5:39338505-39338863 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 265 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 96, 22 |
| Conread position: | 659-1029 |
| Cow position: | chr5:25444984-25444625 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 57, 22 |
| Conread position: | 659-1032 |
| Cow position: | chr5:47838195-47837828 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 44, 29 |
| Conread position: | 660-1032 |
| Cow position: | chr5:31249245-31249602 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 259 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 56, 28 |
| Conread position: | 662-838 |
| Cow position: | chr5:2489663-2489488 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 8 |
| Conread position: | 665-890 |
| Cow position: | chr5:45196385-45196610 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 58, 43 |
| Conread position: | 675-1027 |
| Cow position: | chr5:59045111-59044774 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 680-838 |
| Cow position: | chr5:59053558-59053402 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 680-1032 |
| Cow position: | chr5:17391791-17391441 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 687-968 |
| Cow position: | chr5:63252460-63252189 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 248, 17 |
| Conread position: | 687-1032 |
| Cow position: | chr5:40388700-40388361 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 243 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 689-869 |
| Cow position: | chr5:56269410-56269590 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 151, 19 |
| Conread position: | 689-870 |
| Cow position: | chr5:59331768-59331947 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 151, 29 |
| Conread position: | 691-989 |
| Cow position: | chr5:43658620-43658927 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 218 |
| Conread position: | 696-844 |
| Cow position: | chr5:39324424-39324572 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 20 |
| Conread position: | 698-1026 |
| Cow position: | chr5:18391547-18391860 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 143, 87 |
| Conread position: | 702-910 |
| Cow position: | chr5:51822592-51822807 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 703-1017 |
| Cow position: | chr5:12691083-12690766 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 52 |
| Conread position: | 706-989 |
| Cow position: | chr5:45710123-45710390 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 10, 127 |
| Conread position: | 707-1027 |
| Cow position: | chr5:47459901-47460206 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 139, 111 |
| Conread position: | 718-870 |
| Cow position: | chr5:53582773-53582618 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 718-1025 |
| Cow position: | chr5:8132707-8133024 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 121, 193 |
| Conread position: | 719-1025 |
| Cow position: | chr5:7393785-7394086 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 9, 32 |
| Conread position: | 723-870 |
| Cow position: | chr5:60041805-60041657 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 725-869 |
| Cow position: | chr5:60277984-60277841 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 728-1018 |
| Cow position: | chr5:17732372-17732096 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 7, 77 |
| Conread position: | 732-978 |
| Cow position: | chr5:66584566-66584329 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 20, 153 |
| Conread position: | 733-1032 |
| Cow position: | chr5:31486848-31486564 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 107, 140 |
| Conread position: | 738-1018 |
| Cow position: | chr5:8761067-8760797 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 21, 149 |
| Conread position: | 738-1029 |
| Cow position: | chr5:7283656-7283939 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 73, 10 |
| Conread position: | 740-991 |
| Cow position: | chr5:8230797-8230547 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 179, 138 |
Show alignments to all cow chromosomes.