Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056N24.5 |
| Conread position: | 573-879 |
| Cow position: | chr6:63011749-63012048 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 14 |
| Conread position: | 573-1032 |
| Cow position: | chr6:16184687-16184224 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 131 |
| Conread position: | 574-1032 |
| Cow position: | chr6:16549225-16548746 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 324 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 71, 13 |
| Conread position: | 580-1032 |
| Cow position: | chr6:32688303-32687868 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 80 |
| Conread position: | 616-1032 |
| Cow position: | chr6:29679129-29678714 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 203 |
| Conread position: | 620-1032 |
| Cow position: | chr6:16611969-16611550 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 34 |
| Conread position: | 621-989 |
| Cow position: | chr6:61811303-61811635 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 298, 35 |
| Conread position: | 621-1026 |
| Cow position: | chr6:5338733-5338323 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 290 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 103, 58 |
| Conread position: | 621-1032 |
| Cow position: | chr6:18414403-18414003 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 278 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 11, 28 |
| Conread position: | 630-1032 |
| Cow position: | chr6:69035515-69035133 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 13 |
| Conread position: | 631-1032 |
| Cow position: | chr6:35751579-35751199 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 59, 23 |
| Conread position: | 631-1032 |
| Cow position: | chr6:43603474-43603081 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 278 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 59, 23 |
| Conread position: | 632-866 |
| Cow position: | chr6:15264911-15264678 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 44, 14 |
| Conread position: | 633-1028 |
| Cow position: | chr6:69054193-69053797 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 74 |
| Conread position: | 640-1032 |
| Cow position: | chr6:29838530-29838909 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 200, 20 |
| Conread position: | 641-838 |
| Cow position: | chr6:20284522-20284716 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 50 |
| Conread position: | 643-890 |
| Cow position: | chr6:61410210-61409960 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 5, 65 |
| Conread position: | 648-802 |
| Cow position: | chr6:8069838-8069689 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 33, 101 |
| Conread position: | 654-1028 |
| Cow position: | chr6:4387360-4387729 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 240 |
| Conread position: | 659-870 |
| Cow position: | chr6:28440581-28440790 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 659-890 |
| Cow position: | chr6:16552318-16552085 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 57, 32 |
| Conread position: | 660-870 |
| Cow position: | chr6:68590605-68590817 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 660-890 |
| Cow position: | chr6:17291798-17291568 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 179, 28 |
| Conread position: | 678-963 |
| Cow position: | chr6:55972326-55972602 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 53, 30 |
| Conread position: | 680-1032 |
| Cow position: | chr6:44758041-44757702 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 160, 8 |
| Conread position: | 681-887 |
| Cow position: | chr6:28743700-28743897 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 195, 25 |
| Conread position: | 687-989 |
| Cow position: | chr6:63028774-63029063 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 161, 17 |
| Conread position: | 690-861 |
| Cow position: | chr6:48212072-48211900 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 26, 14 |
| Conread position: | 691-991 |
| Cow position: | chr6:28598674-28598366 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 5, 216 |
| Conread position: | 692-973 |
| Cow position: | chr6:59218649-59218915 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 694-1032 |
| Cow position: | chr6:26638014-26637692 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 243 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 28, 10 |
| Conread position: | 701-1029 |
| Cow position: | chr6:44232188-44231870 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 173 |
| Conread position: | 702-838 |
| Cow position: | chr6:53264407-53264546 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 702-870 |
| Cow position: | chr6:2592890-2592720 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 19, 63 |
| Conread position: | 703-890 |
| Cow position: | chr6:68263755-68263568 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 13, 83 |
| Conread position: | 703-1032 |
| Cow position: | chr6:35187484-35187802 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 142 |
| Conread position: | 707-870 |
| Cow position: | chr6:55503147-55503310 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 133, 43 |
| Conread position: | 708-867 |
| Cow position: | chr6:22817885-22817731 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 714-1029 |
| Cow position: | chr6:51396217-51395914 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 126, 64 |
| Conread position: | 718-838 |
| Cow position: | chr6:8957029-8957149 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 718-989 |
| Cow position: | chr6:67981670-67981413 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 82, 159 |
| Conread position: | 727-831 |
| Cow position: | chr6:1572112-1572216 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 732-996 |
| Cow position: | chr6:40822127-40821866 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 165, 138 |
| Conread position: | 734-1028 |
| Cow position: | chr6:38823895-38823594 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 49, 68 |
| Conread position: | 778-977 |
| Cow position: | chr6:8018617-8018426 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 889-1029 |
| Cow position: | chr6:63012031-63012172 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 17, 32 |
Show alignments to all cow chromosomes.