Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056N24.5 |
| Conread position: | 616-1017 |
| Cow position: | chr9:22953703-22953305 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 131 |
| Conread position: | 617-1032 |
| Cow position: | chr9:28248654-28249080 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 31 |
| Conread position: | 618-1032 |
| Cow position: | chr9:28281544-28281951 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 14 |
| Conread position: | 619-989 |
| Cow position: | chr9:13453779-13453427 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 35 |
| Conread position: | 619-1022 |
| Cow position: | chr9:62925240-62925630 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 91 |
| Conread position: | 619-1029 |
| Cow position: | chr9:34167516-34167115 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 42 |
| Conread position: | 631-866 |
| Cow position: | chr9:9390733-9390978 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 631-870 |
| Cow position: | chr9:28599412-28599176 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 53, 23 |
| Conread position: | 631-1032 |
| Cow position: | chr9:10896902-10896503 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 23 |
| Conread position: | 640-1032 |
| Cow position: | chr9:6656255-6655875 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 54, 72 |
| Conread position: | 642-1032 |
| Cow position: | chr9:48610697-48610317 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 22, 66 |
| Conread position: | 644-878 |
| Cow position: | chr9:102408-102186 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 44, 73 |
| Conread position: | 644-1032 |
| Cow position: | chr9:55032971-55033350 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 63 |
| Conread position: | 645-1032 |
| Cow position: | chr9:20983884-20984262 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 275 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 40, 54 |
| Conread position: | 647-1032 |
| Cow position: | chr9:25032790-25032423 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 58 |
| Conread position: | 649-1032 |
| Cow position: | chr9:6163682-6164061 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 30, 60 |
| Conread position: | 655-974 |
| Cow position: | chr9:60178591-60178898 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 31, 10 |
| Conread position: | 658-847 |
| Cow position: | chr9:62635700-62635509 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 113, 26 |
| Conread position: | 659-838 |
| Cow position: | chr9:6593910-6594082 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 659-870 |
| Cow position: | chr9:36420633-36420840 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 64, 12 |
| Conread position: | 660-852 |
| Cow position: | chr9:6721786-6721595 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 660-867 |
| Cow position: | chr9:49582910-49582704 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 186, 12 |
| Conread position: | 660-1032 |
| Cow position: | chr9:44560185-44559825 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 267 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 56, 30 |
| Conread position: | 662-1032 |
| Cow position: | chr9:31644268-31643896 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 45 |
| Conread position: | 671-864 |
| Cow position: | chr9:47520312-47520121 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 5, 37 |
| Conread position: | 689-1029 |
| Cow position: | chr9:44718345-44718019 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 151, 15 |
| Conread position: | 690-890 |
| Cow position: | chr9:17990014-17989817 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 60, 14 |
| Conread position: | 691-890 |
| Cow position: | chr9:32609413-32609214 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 25, 151 |
| Conread position: | 691-1032 |
| Cow position: | chr9:6317267-6316930 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 5, 18 |
| Conread position: | 694-877 |
| Cow position: | chr9:40476939-40477121 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 146, 18 |
| Conread position: | 706-934 |
| Cow position: | chr9:44559507-44559732 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 134, 79 |
| Conread position: | 715-1032 |
| Cow position: | chr9:9562013-9561708 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 125, 92 |
| Conread position: | 718-890 |
| Cow position: | chr9:47439050-47438874 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 724-868 |
| Cow position: | chr9:8204153-8204008 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 725-864 |
| Cow position: | chr9:59871942-59872078 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 725-991 |
| Cow position: | chr9:3873660-3873408 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 97, 38 |
| Conread position: | 726-829 |
| Cow position: | chr9:7405496-7405393 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 86 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 727-1025 |
| Cow position: | chr9:25437226-25436932 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 182, 115 |
| Conread position: | 747-1026 |
| Cow position: | chr9:44917446-44917721 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 70, 121 |
| Conread position: | 747-1032 |
| Cow position: | chr9:34315055-34315336 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 93, 37 |
| Conread position: | 786-1018 |
| Cow position: | chr9:9729862-9729636 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 169, 34 |
| Conread position: | 791-991 |
| Cow position: | chr9:36713299-36713112 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 54, 49 |
| Conread position: | 801-1032 |
| Cow position: | chr9:25543150-25542923 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 157, 66 |
| Conread position: | 856-1032 |
| Cow position: | chr9:980510-980338 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 153, 21 |
Show alignments to all cow chromosomes.