Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8056N24.5 |
| Conread position: | 573-1032 |
| Cow position: | chrX:21178061-21177624 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 111 |
| Conread position: | 577-1032 |
| Cow position: | chrX:25434743-25435192 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 266 |
| Conread position: | 604-811 |
| Cow position: | chrX:18507715-18507510 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 616-731 |
| Cow position: | chrX:112188-112302 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 616-845 |
| Cow position: | chrX:15370301-15370053 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 189 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 616-898 |
| Cow position: | chrX:21243153-21242865 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 273 |
| Conread position: | 616-989 |
| Cow position: | chrX:26352532-26352154 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 87 |
| Conread position: | 616-1032 |
| Cow position: | chrX:31909183-31908775 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 16 |
| Conread position: | 616-1032 |
| Cow position: | chrX:38739690-38740091 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 52 |
| Conread position: | 618-877 |
| Cow position: | chrX:39097426-39097177 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 18 |
| Conread position: | 618-976 |
| Cow position: | chrX:1151747-1151415 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 59 |
| Conread position: | 619-893 |
| Cow position: | chrX:13816624-13816901 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 619-970 |
| Cow position: | chrX:25237145-25236817 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 261 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 47, 41 |
| Conread position: | 621-1029 |
| Cow position: | chrX:6815548-6815967 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 627-1032 |
| Cow position: | chrX:11810427-11810032 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 275 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 40, 21 |
| Conread position: | 631-805 |
| Cow position: | chrX:25227312-25227484 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 41, 23 |
| Conread position: | 631-885 |
| Cow position: | chrX:24630757-24631011 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 53, 12 |
| Conread position: | 631-989 |
| Cow position: | chrX:42549527-42549859 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 51, 23 |
| Conread position: | 631-1032 |
| Cow position: | chrX:11840959-11840577 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 208, 59 |
| Conread position: | 631-1032 |
| Cow position: | chrX:42915489-42915861 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 271 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 242, 22 |
| Conread position: | 632-989 |
| Cow position: | chrX:31443684-31444012 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 52, 22 |
| Conread position: | 634-1024 |
| Cow position: | chrX:11571773-11572138 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 635-878 |
| Cow position: | chrX:13259506-13259264 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 43, 11 |
| Conread position: | 638-1032 |
| Cow position: | chrX:44191964-44191575 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 639-1032 |
| Cow position: | chrX:42066211-42066590 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 70, 49 |
| Conread position: | 645-1032 |
| Cow position: | chrX:25218932-25219298 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 40, 64 |
| Conread position: | 645-1032 |
| Cow position: | chrX:29774426-29774798 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 267 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 350, 63 |
| Conread position: | 648-1032 |
| Cow position: | chrX:23364503-23364129 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 38 |
| Conread position: | 651-869 |
| Cow position: | chrX:34863529-34863321 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 661-802 |
| Cow position: | chrX:17483125-17482985 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 680-867 |
| Cow position: | chrX:41929848-41930035 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 166, 8 |
| Conread position: | 682-1032 |
| Cow position: | chrX:29901157-29901491 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 34, 6 |
| Conread position: | 688-1032 |
| Cow position: | chrX:31919305-31918976 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 244 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 152, 20 |
| Conread position: | 689-896 |
| Cow position: | chrX:31466156-31465951 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 152, 15 |
| Conread position: | 690-868 |
| Cow position: | chrX:4547576-4547395 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 703-870 |
| Cow position: | chrX:32568669-32568498 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 709-945 |
| Cow position: | chrX:25442057-25441817 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 710-1028 |
| Cow position: | chrX:1340644-1340338 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 69, 166 |
| Conread position: | 716-1032 |
| Cow position: | chrX:38139234-38138933 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 124, 157 |
| Conread position: | 717-954 |
| Cow position: | chrX:15267188-15267418 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 14, 33 |
| Conread position: | 718-1032 |
| Cow position: | chrX:3040395-3040092 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 227 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 128, 65 |
| Conread position: | 725-1024 |
| Cow position: | chrX:219692-219978 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 117, 76 |
| Conread position: | 748-1032 |
| Cow position: | chrX:112297-112570 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 258, 23 |
| Conread position: | 760-1026 |
| Cow position: | chrX:30675361-30675097 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 108, 72 |
Show alignments to all cow chromosomes.