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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8057G08.5
        

               
Conread position:
               
175-412
               

               
Cow position:
               
chrX:24365676-24365916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
34, 10
               

               
Conread position:
               
183-378
               

               
Cow position:
               
chrX:19469368-19469563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
13, 137
               

               
Conread position:
               
184-413
               

               
Cow position:
               
chrX:36068149-36067923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
39, 9
               

               
Conread position:
               
184-414
               

               
Cow position:
               
chrX:29230133-29229917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
185-408
               

               
Cow position:
               
chrX:11317830-11318054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
24, 138
               

               
Conread position:
               
185-414
               

               
Cow position:
               
chrX:42469808-42470034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
85, 8
               

               
Conread position:
               
186-412
               

               
Cow position:
               
chrX:46546743-46546964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
38, 19
               

               
Conread position:
               
186-413
               

               
Cow position:
               
chrX:41068857-41068629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
151, 7
               

               
Conread position:
               
186-414
               

               
Cow position:
               
chrX:17726107-17725881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
187-399
               

               
Cow position:
               
chrX:4515822-4515606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
85, 27
               

               
Conread position:
               
187-414
               

               
Cow position:
               
chrX:5118367-5118595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
85, 8
               

               
Conread position:
               
187-414
               

               
Cow position:
               
chrX:8869270-8869495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
220, 0
               

               
Conread position:
               
188-412
               

               
Cow position:
               
chrX:45977057-45976831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
36, 31
               

               
Conread position:
               
193-315
               

               
Cow position:
               
chrX:27668832-27668954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
193-316
               

               
Cow position:
               
chrX:4467093-4466970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
193-324
               

               
Cow position:
               
chrX:2936083-2935952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
193-328
               

               
Cow position:
               
chrX:12972810-12972672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
193-332
               

               
Cow position:
               
chrX:45382920-45383059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
133, 62
               

               
Conread position:
               
193-334
               

               
Cow position:
               
chrX:27145730-27145590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
193-357
               

               
Cow position:
               
chrX:6599656-6599820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
193-357
               

               
Cow position:
               
chrX:29585245-29585084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
193-359
               

               
Cow position:
               
chrX:38642375-38642211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
193-366
               

               
Cow position:
               
chrX:27306580-27306407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
193-367
               

               
Cow position:
               
chrX:37072515-37072348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
193-370
               

               
Cow position:
               
chrX:22392858-22393035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
193-374
               

               
Cow position:
               
chrX:25328490-25328659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
193-379
               

               
Cow position:
               
chrX:14275617-14275804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
193-382
               

               
Cow position:
               
chrX:20957364-20957187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
193-386
               

               
Cow position:
               
chrX:12082198-12082390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
132, 66
               

               
Conread position:
               
193-388
               

               
Cow position:
               
chrX:32623696-32623501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
31, 7
               

               
Conread position:
               
193-395
               

               
Cow position:
               
chrX:46429693-46429894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
131, 122
               

               
Conread position:
               
193-400
               

               
Cow position:
               
chrX:23562758-23562556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
31, 27
               

               
Conread position:
               
193-400
               

               
Cow position:
               
chrX:38549573-38549368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
193-402
               

               
Cow position:
               
chrX:11073065-11073270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
193-402
               

               
Cow position:
               
chrX:18272932-18273139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
193-402
               

               
Cow position:
               
chrX:27393900-27394101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
193-402
               

               
Cow position:
               
chrX:32821154-32820949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
193-403
               

               
Cow position:
               
chrX:5135393-5135607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
193-403
               

               
Cow position:
               
chrX:41192830-41192626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
126, 168
               

               
Conread position:
               
193-408
               

               
Cow position:
               
chrX:42380986-42381187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
193-411
               

               
Cow position:
               
chrX:42855584-42855365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
118, 166
               

               
Conread position:
               
193-412
               

               
Cow position:
               
chrX:6690134-6690346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
31, 27
               

               
Conread position:
               
193-412
               

               
Cow position:
               
chrX:7695875-7695658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 27
               

               
Conread position:
               
193-412
               

               
Cow position:
               
chrX:33493902-33493687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
193-412
               

               
Cow position:
               
chrX:34532646-34532430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
193-412
               

               
Cow position:
               
chrX:47484139-47484356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 12
               

               
Conread position:
               
193-413
               

               
Cow position:
               
chrX:11656207-11656000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
193-413
               

               
Cow position:
               
chrX:27431792-27432006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
193-413
               

               
Cow position:
               
chrX:35543013-35542803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
167, 76
               

               
Conread position:
               
193-413
               

               
Cow position:
               
chrX:38853323-38853106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
31, 27
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:6414167-6413955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:6544380-6544163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
131, 61
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:8925824-8925608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 7
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:9201674-9201457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:11938807-11939020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
86, 127
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:13177350-13177558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:13647659-13647878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:17795107-17794890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
116, 129
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:19273581-19273815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:20584454-20584231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
132, 120
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:21986165-21986385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:22074926-22074707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
55, 147
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:22482565-22482779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 61
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:26881439-26881661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:31312155-31311936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
136, 125
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:31436600-31436385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:33855094-33855326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
111, 26
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:34314150-34313936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
131, 97
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:34377068-34376854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:34411972-34411749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:34792186-34792401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 27
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:34836938-34837147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:35224422-35224203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
31, 23
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:37232533-37232320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:37574966-37574758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:37986351-37986140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
133, 47
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:38006644-38006857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:39558223-39558443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:40035314-40035535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
79, 94
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:40269618-40269395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:40557553-40557774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:40685202-40685424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:41884286-41884507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:42927698-42927912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:43115276-43115059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
136, 72
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:45110782-45110563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:45174976-45174756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
144, 122
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:45846227-45846006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
127, 91
               

               
Conread position:
               
193-414
               

               
Cow position:
               
chrX:46072691-46072913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
193-415
               

               
Cow position:
               
chrX:12979708-12979921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
129, 166
               

               
Conread position:
               
193-415
               

               
Cow position:
               
chrX:29050373-29050153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
193-415
               

               
Cow position:
               
chrX:43730098-43730312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
193-425
               

               
Cow position:
               
chrX:23113411-23113172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
123, 186
               

               
Conread position:
               
194-398
               

               
Cow position:
               
chrX:41871192-41870987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
30, 25
               

               
Conread position:
               
194-399
               

               
Cow position:
               
chrX:4152906-4153113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
195-402
               

               
Cow position:
               
chrX:29121171-29120965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
195-413
               

               
Cow position:
               
chrX:1466286-1466069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
195-414
               

               
Cow position:
               
chrX:45414180-45414393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
195-415
               

               
Cow position:
               
chrX:9365552-9365769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
29, 19
               

               
Conread position:
               
198-414
               

               
Cow position:
               
chrX:878259-878470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
126, 175
               

               
Conread position:
               
201-400
               

               
Cow position:
               
chrX:22115199-22115396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
180, 118
               

               
Conread position:
               
201-402
               

               
Cow position:
               
chrX:9252045-9252243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
201-413
               

               
Cow position:
               
chrX:37780991-37781203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
203-375
               

               
Cow position:
               
chrX:35985934-35985764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
134, 74
               

               
Conread position:
               
208-402
               

               
Cow position:
               
chrX:42235413-42235609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
103, 131
               

               
Conread position:
               
209-414
               

               
Cow position:
               
chrX:14883845-14884051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
211-401
               

               
Cow position:
               
chrX:21566515-21566323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
126, 107
               

               
Conread position:
               
211-401
               

               
Cow position:
               
chrX:39220187-39220000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
211-402
               

               
Cow position:
               
chrX:11614801-11614619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
211-402
               

               
Cow position:
               
chrX:38936808-38936616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
211-411
               

               
Cow position:
               
chrX:7710431-7710628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 5
               

               
Conread position:
               
211-413
               

               
Cow position:
               
chrX:29601720-29601922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
211-414
               

               
Cow position:
               
chrX:10411878-10412078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
211-414
               

               
Cow position:
               
chrX:23513909-23514108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
211-414
               

               
Cow position:
               
chrX:26625563-26625763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
106, 171
               

               
Conread position:
               
212-414
               

               
Cow position:
               
chrX:7646358-7646163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
213-395
               

               
Cow position:
               
chrX:38208438-38208617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 68
               

               
Conread position:
               
213-402
               

               
Cow position:
               
chrX:34441347-34441532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
11, 77
               

               
Conread position:
               
213-411
               

               
Cow position:
               
chrX:29544770-29544967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
11, 107
               

               
Conread position:
               
213-412
               

               
Cow position:
               
chrX:5872424-5872230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
11, 106
               

               
Conread position:
               
213-413
               

               
Cow position:
               
chrX:20339787-20339981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
213-413
               

               
Cow position:
               
chrX:46532388-46532592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 196
               

               
Conread position:
               
213-414
               

               
Cow position:
               
chrX:12095665-12095867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
11, 122
               

               
Conread position:
               
218-369
               

               
Cow position:
               
chrX:44095360-44095209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
144, 5
               

               
Conread position:
               
221-411
               

               
Cow position:
               
chrX:16348473-16348658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
116, 33
               

               
Conread position:
               
222-360
               

               
Cow position:
               
chrX:40531946-40532083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
222-364
               

               
Cow position:
               
chrX:11326000-11326143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
222-402
               

               
Cow position:
               
chrX:11856527-11856348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
222-402
               

               
Cow position:
               
chrX:13382421-13382249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
222-411
               

               
Cow position:
               
chrX:7572002-7571813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
222-413
               

               
Cow position:
               
chrX:27680495-27680307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
102, 155
               

               
Conread position:
               
222-420
               

               
Cow position:
               
chrX:1499762-1499568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
222-428
               

               
Cow position:
               
chrX:169449-169647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
204, 48
               

               
Conread position:
               
223-415
               

               
Cow position:
               
chrX:43568015-43567828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
226-402
               

               
Cow position:
               
chrX:34662753-34662928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
94, 105
               

               
Conread position:
               
227-377
               

               
Cow position:
               
chrX:12290811-12290666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
227-388
               

               
Cow position:
               
chrX:47238185-47238026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
227-399
               

               
Cow position:
               
chrX:35885635-35885805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
227-400
               

               
Cow position:
               
chrX:33000997-33000824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
227-400
               

               
Cow position:
               
chrX:36866265-36866092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
103, 88
               

               
Conread position:
               
227-402
               

               
Cow position:
               
chrX:842249-842078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
160, 78
               

               
Conread position:
               
227-402
               

               
Cow position:
               
chrX:4296733-4296900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
227-402
               

               
Cow position:
               
chrX:8731185-8731006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
99, 32
               

               
Conread position:
               
227-402
               

               
Cow position:
               
chrX:11633774-11633599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
227-402
               

               
Cow position:
               
chrX:17231827-17231653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
98, 128
               

               
Conread position:
               
227-402
               

               
Cow position:
               
chrX:17949401-17949568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
227-402
               

               
Cow position:
               
chrX:21642390-21642558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
227-402
               

               
Cow position:
               
chrX:23563699-23563871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
227-402
               

               
Cow position:
               
chrX:31515266-31515088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 133
               

               
Conread position:
               
227-402
               

               
Cow position:
               
chrX:40320498-40320327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
227-402
               

               
Cow position:
               
chrX:40680706-40680530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
227-402
               

               
Cow position:
               
chrX:40809785-40809608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 84
               

               
Conread position:
               
227-402
               

               
Cow position:
               
chrX:40826659-40826832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
227-402
               

               
Cow position:
               
chrX:41027251-41027075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
227-402
               

               
Cow position:
               
chrX:41878842-41879013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
86, 31
               

               
Conread position:
               
227-402
               

               
Cow position:
               
chrX:45403733-45403908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
104, 91
               

               
Conread position:
               
227-402
               

               
Cow position:
               
chrX:46722642-46722815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 59
               

               
Conread position:
               
227-402
               

               
Cow position:
               
chrX:47967699-47967520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
227-402
               

               
Cow position:
               
chrX:48071253-48071080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
227-411
               

               
Cow position:
               
chrX:28878082-28878259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
227-411
               

               
Cow position:
               
chrX:42171202-42171386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
105, 88
               

               
Conread position:
               
227-412
               

               
Cow position:
               
chrX:3580036-3579854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
172, 90
               

               
Conread position:
               
227-412
               

               
Cow position:
               
chrX:5679480-5679656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
227-412
               

               
Cow position:
               
chrX:27228218-27228037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
227-412
               

               
Cow position:
               
chrX:40480780-40480958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
227-412
               

               
Cow position:
               
chrX:42247090-42247275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
110, 173
               

               
Conread position:
               
227-412
               

               
Cow position:
               
chrX:46433583-46433400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
135, 88
               

               
Conread position:
               
227-412
               

               
Cow position:
               
chrX:46587914-46587729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
98, 91
               

               
Conread position:
               
227-413
               

               
Cow position:
               
chrX:44054894-44054715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 103
               

               
Conread position:
               
227-414
               

               
Cow position:
               
chrX:15815176-15814994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
227-414
               

               
Cow position:
               
chrX:27175090-27174902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
115, 42
               

               
Conread position:
               
227-414
               

               
Cow position:
               
chrX:34402092-34401905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
99, 85
               

               
Conread position:
               
227-414
               

               
Cow position:
               
chrX:34504956-34505140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
15, 153
               

               
Conread position:
               
227-414
               

               
Cow position:
               
chrX:38964200-38964011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
98, 91
               

               
Conread position:
               
227-414
               

               
Cow position:
               
chrX:46291229-46291045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
99, 85
               

               
Conread position:
               
227-414
               

               
Cow position:
               
chrX:47345419-47345241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
227-420
               

               
Cow position:
               
chrX:47873244-47873436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
184, 103
               

               
Conread position:
               
227-422
               

               
Cow position:
               
chrX:45875484-45875292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
227-428
               

               
Cow position:
               
chrX:31250480-31250280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
180, 111
               

               
Conread position:
               
228-378
               

               
Cow position:
               
chrX:5919583-5919433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
104, 111
               

               
Conread position:
               
228-402
               

               
Cow position:
               
chrX:35590665-35590838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
102, 92
               

               
Conread position:
               
228-410
               

               
Cow position:
               
chrX:6278407-6278589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
228-411
               

               
Cow position:
               
chrX:6265508-6265689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
97, 27
               

               
Conread position:
               
228-412
               

               
Cow position:
               
chrX:30133227-30133411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
97, 90
               

               
Conread position:
               
228-413
               

               
Cow position:
               
chrX:161503-161321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
228-413
               

               
Cow position:
               
chrX:27685340-27685156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
10, 90
               

               
Conread position:
               
228-414
               

               
Cow position:
               
chrX:29680170-29680353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
228-414
               

               
Cow position:
               
chrX:38560650-38560464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
92, 116
               

               
Conread position:
               
228-423
               

               
Cow position:
               
chrX:43779756-43779948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
228-430
               

               
Cow position:
               
chrX:10516344-10516148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
99, 90
               

               
Conread position:
               
229-387
               

               
Cow position:
               
chrX:13147071-13146916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
229-401
               

               
Cow position:
               
chrX:12405291-12405463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
108, 89
               

               
Conread position:
               
229-401
               

               
Cow position:
               
chrX:36514802-36514974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
24, 95
               

               
Conread position:
               
229-412
               

               
Cow position:
               
chrX:22387160-22387333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
229-414
               

               
Cow position:
               
chrX:616169-616355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
99, 89
               

               
Conread position:
               
229-414
               

               
Cow position:
               
chrX:29542127-29542312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
230-402
               

               
Cow position:
               
chrX:1572050-1572218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
231-414
               

               
Cow position:
               
chrX:44397098-44396926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
232-377
               

               
Cow position:
               
chrX:17542047-17541902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
232-414
               

               
Cow position:
               
chrX:9650937-9651118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
234-413
               

               
Cow position:
               
chrX:5638084-5638257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
238-412
               

               
Cow position:
               
chrX:11589507-11589678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
240-414
               

               
Cow position:
               
chrX:618923-619097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-414
               

               
Cow position:
               
chrX:13785286-13785456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
246-412
               

               
Cow position:
               
chrX:6234376-6234543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
249-399
               

               
Cow position:
               
chrX:26875811-26875957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
259-413
               

               
Cow position:
               
chrX:45648934-45648781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
264-414
               

               
Cow position:
               
chrX:34991091-34990942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
61, 102
               

               
Conread position:
               
266-400
               

               
Cow position:
               
chrX:5677838-5677971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
61, 66
               

               
Conread position:
               
269-414
               

               
Cow position:
               
chrX:19015487-19015345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 89
               
Show alignments to all cow chromosomes.