Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8057M16.3 |
| Conread position: | 347-532 |
| Cow position: | chr12:16205667-16205855 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 361-532 |
| Cow position: | chr12:30596420-30596600 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 40, 101 |
| Conread position: | 369-535 |
| Cow position: | chr12:17262817-17262981 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 107, 146 |
| Conread position: | 370-532 |
| Cow position: | chr12:7645842-7645679 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 371-535 |
| Cow position: | chr12:14855778-14855942 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 111, 140 |
| Conread position: | 372-492 |
| Cow position: | chr12:47063908-47063788 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 106, 53 |
| Conread position: | 372-513 |
| Cow position: | chr12:24204345-24204202 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 372-514 |
| Cow position: | chr12:25312404-25312264 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 104, 81 |
| Conread position: | 372-523 |
| Cow position: | chr12:9131235-9131392 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 372-523 |
| Cow position: | chr12:29691228-29691076 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 104, 126 |
| Conread position: | 372-528 |
| Cow position: | chr12:7996377-7996538 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 27, 82 |
| Conread position: | 372-529 |
| Cow position: | chr12:14325302-14325146 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 372-530 |
| Cow position: | chr12:4582910-4583071 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 143 |
| Conread position: | 372-530 |
| Cow position: | chr12:43671672-43671831 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 138, 17 |
| Conread position: | 372-532 |
| Cow position: | chr12:1223376-1223217 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 372-532 |
| Cow position: | chr12:3816449-3816618 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 372-532 |
| Cow position: | chr12:5658782-5658615 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 51 |
| Conread position: | 372-532 |
| Cow position: | chr12:18093858-18094021 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 86, 71 |
| Conread position: | 372-532 |
| Cow position: | chr12:18966789-18966625 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 372-532 |
| Cow position: | chr12:27055571-27055734 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 29, 85 |
| Conread position: | 372-532 |
| Cow position: | chr12:30064904-30065064 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 137 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 150, 137 |
| Conread position: | 372-532 |
| Cow position: | chr12:34242361-34242194 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 372-532 |
| Cow position: | chr12:40716076-40715917 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 137, 119 |
| Conread position: | 372-532 |
| Cow position: | chr12:44057484-44057648 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 105, 80 |
| Conread position: | 372-534 |
| Cow position: | chr12:45541676-45541838 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 102, 159 |
| Conread position: | 372-536 |
| Cow position: | chr12:32413478-32413652 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 9, 168 |
| Conread position: | 372-545 |
| Cow position: | chr12:34849886-34849713 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 139, 79 |
| Conread position: | 372-545 |
| Cow position: | chr12:34852523-34852350 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 139, 79 |
| Conread position: | 372-550 |
| Cow position: | chr12:5497857-5497680 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 372-552 |
| Cow position: | chr12:5797592-5797416 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 104, 53 |
| Conread position: | 372-552 |
| Cow position: | chr12:13657779-13657596 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 29, 94 |
| Conread position: | 372-552 |
| Cow position: | chr12:18769106-18768922 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 14, 169 |
| Conread position: | 372-552 |
| Cow position: | chr12:25933649-25933834 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 28, 124 |
| Conread position: | 373-524 |
| Cow position: | chr12:28559263-28559425 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 373-528 |
| Cow position: | chr12:39781374-39781213 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 28, 115 |
| Conread position: | 373-529 |
| Cow position: | chr12:17109924-17109767 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 109, 37 |
| Conread position: | 373-532 |
| Cow position: | chr12:42477977-42478141 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 12 |
| Conread position: | 373-534 |
| Cow position: | chr12:25619406-25619245 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 56, 79 |
| Conread position: | 374-492 |
| Cow position: | chr12:39754253-39754372 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 374-521 |
| Cow position: | chr12:31528889-31528735 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 376-514 |
| Cow position: | chr12:23379546-23379683 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 31, 40 |
| Conread position: | 377-529 |
| Cow position: | chr12:15984773-15984621 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 378-532 |
| Cow position: | chr12:11520147-11520304 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 380-532 |
| Cow position: | chr12:28017023-28017177 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 381-520 |
| Cow position: | chr12:27038765-27038623 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 7, 30 |
| Conread position: | 384-527 |
| Cow position: | chr12:16850933-16850789 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 48, 128 |
| Conread position: | 385-531 |
| Cow position: | chr12:21829055-21829201 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 95, 25 |
| Conread position: | 391-532 |
| Cow position: | chr12:7274711-7274574 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 394-532 |
| Cow position: | chr12:11081109-11080968 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 396-532 |
| Cow position: | chr12:32264413-32264274 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 25, 100 |
| Conread position: | 398-516 |
| Cow position: | chr12:28831075-28831194 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 398-552 |
| Cow position: | chr12:36109268-36109109 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 405-539 |
| Cow position: | chr12:245711-245577 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 105, 56 |
| Conread position: | 419-549 |
| Cow position: | chr12:11499774-11499902 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 423-543 |
| Cow position: | chr12:9780251-9780134 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 88 |
Show alignments to all cow chromosomes.