Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8057M16.3 |
| Conread position: | 363-532 |
| Cow position: | chr15:12163426-12163600 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 368-531 |
| Cow position: | chr15:14758163-14758329 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 88, 38 |
| Conread position: | 369-518 |
| Cow position: | chr15:9178117-9178267 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 371-532 |
| Cow position: | chr15:22886635-22886477 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 97, 21 |
| Conread position: | 372-478 |
| Cow position: | chr15:46005566-46005672 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 372-488 |
| Cow position: | chr15:4277978-4278094 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 108, 38 |
| Conread position: | 372-499 |
| Cow position: | chr15:38322921-38322789 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-501 |
| Cow position: | chr15:31182512-31182386 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 372-507 |
| Cow position: | chr15:26421515-26421652 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 372-510 |
| Cow position: | chr15:36659030-36659169 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 372-510 |
| Cow position: | chr15:50561311-50561453 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 44, 133 |
| Conread position: | 372-512 |
| Cow position: | chr15:37964616-37964479 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 372-528 |
| Cow position: | chr15:21836766-21836612 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 61, 91 |
| Conread position: | 372-532 |
| Cow position: | chr15:8022136-8021975 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 135 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 372-532 |
| Cow position: | chr15:15215103-15214936 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 372-532 |
| Cow position: | chr15:23547907-23548068 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 372-532 |
| Cow position: | chr15:24285066-24284904 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 17 |
| Conread position: | 372-532 |
| Cow position: | chr15:24411505-24411340 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 372-532 |
| Cow position: | chr15:24864184-24864344 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 104, 30 |
| Conread position: | 372-532 |
| Cow position: | chr15:24977092-24977254 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 372-532 |
| Cow position: | chr15:27247588-27247425 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 103, 51 |
| Conread position: | 372-532 |
| Cow position: | chr15:27863240-27863407 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 372-532 |
| Cow position: | chr15:34037104-34037267 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 21, 144 |
| Conread position: | 372-532 |
| Cow position: | chr15:34255643-34255799 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 102, 79 |
| Conread position: | 372-532 |
| Cow position: | chr15:35967399-35967564 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 46 |
| Conread position: | 372-532 |
| Cow position: | chr15:39200866-39200703 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 22, 113 |
| Conread position: | 372-532 |
| Cow position: | chr15:42195181-42195342 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 29, 83 |
| Conread position: | 372-532 |
| Cow position: | chr15:52981914-52981760 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 104, 47 |
| Conread position: | 372-534 |
| Cow position: | chr15:5722588-5722742 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 372-539 |
| Cow position: | chr15:4216060-4216220 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 108, 67 |
| Conread position: | 372-542 |
| Cow position: | chr15:11957625-11957447 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 372-542 |
| Cow position: | chr15:20482760-20482939 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-549 |
| Cow position: | chr15:47821461-47821280 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 372-550 |
| Cow position: | chr15:10569023-10569208 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 25, 137 |
| Conread position: | 372-550 |
| Cow position: | chr15:12036895-12036715 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 86, 142 |
| Conread position: | 372-551 |
| Cow position: | chr15:19725635-19725812 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 105, 66 |
| Conread position: | 373-502 |
| Cow position: | chr15:40498208-40498342 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 373-521 |
| Cow position: | chr15:36839092-36839243 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 105, 129 |
| Conread position: | 373-529 |
| Cow position: | chr15:22854487-22854335 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 109, 78 |
| Conread position: | 373-530 |
| Cow position: | chr15:17213538-17213383 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 109, 24 |
| Conread position: | 373-531 |
| Cow position: | chr15:17788191-17788031 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 373-531 |
| Cow position: | chr15:35283382-35283545 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 373-532 |
| Cow position: | chr15:26933864-26934030 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 373-532 |
| Cow position: | chr15:37918731-37918565 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 373-542 |
| Cow position: | chr15:31599415-31599242 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 373-552 |
| Cow position: | chr15:31907730-31907550 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 103, 59 |
| Conread position: | 374-482 |
| Cow position: | chr15:23957792-23957685 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 374-483 |
| Cow position: | chr15:23140048-23140154 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 105, 82 |
| Conread position: | 374-530 |
| Cow position: | chr15:10303306-10303143 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 375-539 |
| Cow position: | chr15:16824912-16824754 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 152, 10 |
| Conread position: | 375-542 |
| Cow position: | chr15:10189442-10189273 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 143 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 375-552 |
| Cow position: | chr15:6749766-6749948 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 376-488 |
| Cow position: | chr15:35663532-35663415 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 376-523 |
| Cow position: | chr15:31502803-31502957 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 376-530 |
| Cow position: | chr15:3572621-3572777 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 376-532 |
| Cow position: | chr15:23109201-23109364 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 377-507 |
| Cow position: | chr15:27749102-27749230 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 66, 59 |
| Conread position: | 377-530 |
| Cow position: | chr15:44879683-44879527 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 377-532 |
| Cow position: | chr15:5527193-5527033 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 377-532 |
| Cow position: | chr15:19323400-19323242 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 39, 28 |
| Conread position: | 378-530 |
| Cow position: | chr15:23224477-23224617 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 13, 76 |
| Conread position: | 379-532 |
| Cow position: | chr15:39916769-39916611 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 380-531 |
| Cow position: | chr15:7059327-7059484 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 7, 119 |
| Conread position: | 383-542 |
| Cow position: | chr15:28177529-28177365 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 389-532 |
| Cow position: | chr15:51583104-51582962 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 87, 122 |
| Conread position: | 391-527 |
| Cow position: | chr15:10698497-10698623 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 391-532 |
| Cow position: | chr15:39226676-39226819 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 393-532 |
| Cow position: | chr15:14323355-14323494 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 394-531 |
| Cow position: | chr15:44297148-44297010 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 115, 90 |
| Conread position: | 394-532 |
| Cow position: | chr15:49237933-49238070 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 88, 117 |
| Conread position: | 394-550 |
| Cow position: | chr15:20370667-20370825 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 88, 57 |
| Conread position: | 397-552 |
| Cow position: | chr15:2117941-2117782 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 405-545 |
| Cow position: | chr15:41804061-41803923 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 420-532 |
| Cow position: | chr15:45661361-45661474 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 90, 21 |
| Conread position: | 426-550 |
| Cow position: | chr15:691032-691161 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 445-530 |
| Cow position: | chr15:27047027-27047113 (view UCSC Genome Browser custom track) |
| Alignm length: | 87 |
| Alignm identity: | 76 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
Show alignments to all cow chromosomes.