Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8057M16.3 |
| Conread position: | 327-533 |
| Cow position: | chr16:9407915-9407707 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 161 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 149, 12 |
| Conread position: | 360-508 |
| Cow position: | chr16:23978442-23978289 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 360-529 |
| Cow position: | chr16:20260466-20260639 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 365-531 |
| Cow position: | chr16:5580310-5580484 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 368-521 |
| Cow position: | chr16:32837545-32837389 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 368-531 |
| Cow position: | chr16:2618981-2618818 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 111, 37 |
| Conread position: | 372-465 |
| Cow position: | chr16:11153184-11153091 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 79 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 372-478 |
| Cow position: | chr16:51879995-51879890 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 372-488 |
| Cow position: | chr16:56104908-56104789 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 87 |
| Conread position: | 372-498 |
| Cow position: | chr16:52222322-52222197 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 372-500 |
| Cow position: | chr16:53420348-53420475 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 107, 79 |
| Conread position: | 372-502 |
| Cow position: | chr16:5333583-5333456 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 372-510 |
| Cow position: | chr16:19976974-19977110 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 104, 14 |
| Conread position: | 372-511 |
| Cow position: | chr16:10303742-10303603 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 107, 25 |
| Conread position: | 372-513 |
| Cow position: | chr16:4499438-4499573 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 372-520 |
| Cow position: | chr16:15320475-15320328 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 104, 54 |
| Conread position: | 372-526 |
| Cow position: | chr16:47909340-47909178 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-527 |
| Cow position: | chr16:23066666-23066820 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 40, 48 |
| Conread position: | 372-530 |
| Cow position: | chr16:8704272-8704424 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 102, 79 |
| Conread position: | 372-530 |
| Cow position: | chr16:11662040-11662201 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 372-530 |
| Cow position: | chr16:36930313-36930150 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 101 |
| Conread position: | 372-531 |
| Cow position: | chr16:43082228-43082072 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 372-532 |
| Cow position: | chr16:16056056-16055891 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 22, 124 |
| Conread position: | 372-532 |
| Cow position: | chr16:16946534-16946362 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 372-532 |
| Cow position: | chr16:18557261-18557093 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-532 |
| Cow position: | chr16:26156133-26155972 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 109, 71 |
| Conread position: | 372-532 |
| Cow position: | chr16:28267020-28266867 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 104, 79 |
| Conread position: | 372-532 |
| Cow position: | chr16:28454285-28454130 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 104, 129 |
| Conread position: | 372-532 |
| Cow position: | chr16:30639340-30639495 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 106, 21 |
| Conread position: | 372-532 |
| Cow position: | chr16:31419450-31419619 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 372-532 |
| Cow position: | chr16:31490323-31490485 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 107, 81 |
| Conread position: | 372-532 |
| Cow position: | chr16:45693152-45693313 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 372-532 |
| Cow position: | chr16:50114189-50114358 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-542 |
| Cow position: | chr16:34210395-34210229 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 135, 50 |
| Conread position: | 372-544 |
| Cow position: | chr16:52577461-52577639 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 173 |
| Conread position: | 372-546 |
| Cow position: | chr16:9510867-9510690 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 372-546 |
| Cow position: | chr16:16546080-16546252 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 144 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 104, 141 |
| Conread position: | 372-546 |
| Cow position: | chr16:42312389-42312569 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 63 |
| Conread position: | 372-548 |
| Cow position: | chr16:19003084-19002905 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 372-552 |
| Cow position: | chr16:44898745-44898571 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 104, 79 |
| Conread position: | 373-521 |
| Cow position: | chr16:39156422-39156275 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 16 |
| Conread position: | 373-527 |
| Cow position: | chr16:55586600-55586448 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 106, 5 |
| Conread position: | 373-531 |
| Cow position: | chr16:37719162-37719323 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 143 |
| Conread position: | 373-532 |
| Cow position: | chr16:38620961-38621125 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 373-532 |
| Cow position: | chr16:53267730-53267893 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 23, 82 |
| Conread position: | 374-532 |
| Cow position: | chr16:47368768-47368920 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 102, 39 |
| Conread position: | 375-529 |
| Cow position: | chr16:12072648-12072802 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 107, 23 |
| Conread position: | 375-532 |
| Cow position: | chr16:18427194-18427350 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 103, 125 |
| Conread position: | 375-532 |
| Cow position: | chr16:25464066-25464220 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 105, 77 |
| Conread position: | 376-531 |
| Cow position: | chr16:10611615-10611464 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 16, 105 |
| Conread position: | 377-532 |
| Cow position: | chr16:56282955-56283115 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 62 |
| Conread position: | 380-511 |
| Cow position: | chr16:47192171-47192305 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 17, 37 |
| Conread position: | 381-532 |
| Cow position: | chr16:33121621-33121774 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 41 |
| Conread position: | 391-523 |
| Cow position: | chr16:17617111-17616978 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 6, 63 |
| Conread position: | 393-532 |
| Cow position: | chr16:10406553-10406409 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 393-532 |
| Cow position: | chr16:43762471-43762334 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 90, 61 |
| Conread position: | 394-526 |
| Cow position: | chr16:34384733-34384864 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 5, 35 |
| Conread position: | 394-528 |
| Cow position: | chr16:11085353-11085217 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 90, 53 |
| Conread position: | 394-532 |
| Cow position: | chr16:228466-228327 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 82, 98 |
| Conread position: | 394-532 |
| Cow position: | chr16:1440461-1440597 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 116, 38 |
| Conread position: | 394-532 |
| Cow position: | chr16:47116099-47116235 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 82, 113 |
| Conread position: | 398-531 |
| Cow position: | chr16:327929-327793 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 399-534 |
| Cow position: | chr16:52565454-52565591 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 403-526 |
| Cow position: | chr16:46435680-46435803 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 100 |
| Conread position: | 404-533 |
| Cow position: | chr16:49122226-49122095 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 405-532 |
| Cow position: | chr16:4708861-4708731 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 405-532 |
| Cow position: | chr16:11772209-11772079 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 415-527 |
| Cow position: | chr16:29618216-29618328 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 100 |
| Conread position: | 417-532 |
| Cow position: | chr16:29094910-29095029 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 425-532 |
| Cow position: | chr16:56848127-56848017 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
Show alignments to all cow chromosomes.