Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8057M16.3 |
| Conread position: | 356-516 |
| Cow position: | chr17:8861118-8860964 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 120, 93 |
| Conread position: | 361-532 |
| Cow position: | chr17:10314453-10314631 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 368-532 |
| Cow position: | chr17:8279668-8279505 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 33, 85 |
| Conread position: | 369-532 |
| Cow position: | chr17:15922880-15923047 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 372-489 |
| Cow position: | chr17:25708003-25708121 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 372-494 |
| Cow position: | chr17:25181100-25180980 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 108, 79 |
| Conread position: | 372-512 |
| Cow position: | chr17:7595197-7595338 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 125 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 372-518 |
| Cow position: | chr17:4085801-4085949 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 372-518 |
| Cow position: | chr17:9748790-9748937 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 104, 140 |
| Conread position: | 372-518 |
| Cow position: | chr17:34627802-34627657 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 104, 17 |
| Conread position: | 372-524 |
| Cow position: | chr17:1455893-1455742 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 102, 25 |
| Conread position: | 372-528 |
| Cow position: | chr17:3042520-3042682 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 82 |
| Conread position: | 372-528 |
| Cow position: | chr17:27257184-27257012 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 372-530 |
| Cow position: | chr17:144132-143972 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 140 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 104, 44 |
| Conread position: | 372-532 |
| Cow position: | chr17:1328639-1328807 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 372-532 |
| Cow position: | chr17:2271043-2271206 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 25, 146 |
| Conread position: | 372-532 |
| Cow position: | chr17:5787790-5787627 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 53, 102 |
| Conread position: | 372-532 |
| Cow position: | chr17:6570093-6569938 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 104, 81 |
| Conread position: | 372-532 |
| Cow position: | chr17:9060102-9059927 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 372-532 |
| Cow position: | chr17:10220894-10221059 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 83 |
| Conread position: | 372-532 |
| Cow position: | chr17:11655420-11655588 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-532 |
| Cow position: | chr17:13229421-13229587 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 28, 78 |
| Conread position: | 372-532 |
| Cow position: | chr17:13715991-13715825 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 29, 131 |
| Conread position: | 372-532 |
| Cow position: | chr17:18173774-18173621 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 103, 30 |
| Conread position: | 372-532 |
| Cow position: | chr17:20216211-20216377 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 372-532 |
| Cow position: | chr17:26162379-26162216 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 372-532 |
| Cow position: | chr17:27819338-27819501 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 25, 144 |
| Conread position: | 372-532 |
| Cow position: | chr17:30236241-30236400 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 13, 81 |
| Conread position: | 372-532 |
| Cow position: | chr17:32457522-32457361 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 138 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 372-532 |
| Cow position: | chr17:38139552-38139718 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 29, 130 |
| Conread position: | 372-533 |
| Cow position: | chr17:33903875-33903713 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 104, 50 |
| Conread position: | 372-534 |
| Cow position: | chr17:15634838-15634674 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 372-539 |
| Cow position: | chr17:18887723-18887564 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 372-542 |
| Cow position: | chr17:26614685-26614515 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 106, 74 |
| Conread position: | 372-544 |
| Cow position: | chr17:43211550-43211722 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 147, 54 |
| Conread position: | 372-551 |
| Cow position: | chr17:36217139-36216958 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 88 |
| Conread position: | 372-552 |
| Cow position: | chr17:19891667-19891848 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 16, 149 |
| Conread position: | 372-552 |
| Cow position: | chr17:24339215-24339394 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 96, 129 |
| Conread position: | 373-487 |
| Cow position: | chr17:34864619-34864731 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 103, 78 |
| Conread position: | 373-530 |
| Cow position: | chr17:37138807-37138961 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 22, 80 |
| Conread position: | 373-532 |
| Cow position: | chr17:8215236-8215397 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 133 |
| Conread position: | 373-532 |
| Cow position: | chr17:24880788-24880950 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 373-532 |
| Cow position: | chr17:31798404-31798239 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 28, 60 |
| Conread position: | 373-532 |
| Cow position: | chr17:40854897-40855066 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 373-539 |
| Cow position: | chr17:23318272-23318108 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 375-531 |
| Cow position: | chr17:21730248-21730089 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 375-532 |
| Cow position: | chr17:10271542-10271693 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 101, 35 |
| Conread position: | 375-532 |
| Cow position: | chr17:36818086-36818246 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 28, 80 |
| Conread position: | 376-511 |
| Cow position: | chr17:23879474-23879339 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 100, 9 |
| Conread position: | 376-526 |
| Cow position: | chr17:39012770-39012922 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 100, 82 |
| Conread position: | 377-532 |
| Cow position: | chr17:8615789-8615638 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 97, 59 |
| Conread position: | 377-532 |
| Cow position: | chr17:19239831-19239670 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 377-532 |
| Cow position: | chr17:33386469-33386631 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 377-540 |
| Cow position: | chr17:27781119-27781283 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 99, 7 |
| Conread position: | 378-530 |
| Cow position: | chr17:37043362-37043215 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 104, 73 |
| Conread position: | 381-541 |
| Cow position: | chr17:5041354-5041189 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 26, 155 |
| Conread position: | 382-531 |
| Cow position: | chr17:11826400-11826248 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 382-532 |
| Cow position: | chr17:37414844-37414693 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 50, 115 |
| Conread position: | 389-532 |
| Cow position: | chr17:8832079-8831933 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 391-528 |
| Cow position: | chr17:36400169-36400303 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 93, 7 |
| Conread position: | 391-544 |
| Cow position: | chr17:7861636-7861475 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 393-520 |
| Cow position: | chr17:33930227-33930357 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 394-516 |
| Cow position: | chr17:29270787-29270667 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 394-532 |
| Cow position: | chr17:8093916-8094051 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 82, 95 |
| Conread position: | 394-532 |
| Cow position: | chr17:27505166-27505306 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 75, 16 |
| Conread position: | 405-531 |
| Cow position: | chr17:3467046-3467176 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 409-529 |
| Cow position: | chr17:35212441-35212563 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 68, 51 |
| Conread position: | 423-531 |
| Cow position: | chr17:37342194-37342082 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 426-552 |
| Cow position: | chr17:6558955-6559086 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 427-536 |
| Cow position: | chr17:25144984-25144873 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 56, 34 |
Show alignments to all cow chromosomes.