Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8057M16.3 |
| Conread position: | 354-521 |
| Cow position: | chr19:39986371-39986194 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 354-531 |
| Cow position: | chr19:46497911-46498086 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 40, 134 |
| Conread position: | 368-531 |
| Cow position: | chr19:55236479-55236643 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 108, 17 |
| Conread position: | 372-478 |
| Cow position: | chr19:39876535-39876429 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 372-482 |
| Cow position: | chr19:2029026-2028915 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 32 |
| Conread position: | 372-483 |
| Cow position: | chr19:7123857-7123969 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 89 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 372-503 |
| Cow position: | chr19:7839049-7838920 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 104, 79 |
| Conread position: | 372-504 |
| Cow position: | chr19:35064202-35064062 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-517 |
| Cow position: | chr19:6735236-6735084 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 372-526 |
| Cow position: | chr19:14254736-14254580 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 41, 111 |
| Conread position: | 372-526 |
| Cow position: | chr19:15936829-15936983 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 99, 60 |
| Conread position: | 372-530 |
| Cow position: | chr19:24689277-24689434 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 108, 139 |
| Conread position: | 372-531 |
| Cow position: | chr19:19662039-19662195 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 80, 125 |
| Conread position: | 372-531 |
| Cow position: | chr19:21285086-21284923 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 372-531 |
| Cow position: | chr19:31827091-31827247 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 83, 12 |
| Conread position: | 372-531 |
| Cow position: | chr19:36461537-36461371 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 26, 161 |
| Conread position: | 372-532 |
| Cow position: | chr19:2280648-2280488 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 137 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 111, 82 |
| Conread position: | 372-532 |
| Cow position: | chr19:25271423-25271260 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 137 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 372-532 |
| Cow position: | chr19:30935779-30935611 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 83 |
| Conread position: | 372-532 |
| Cow position: | chr19:31381010-31380848 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 104, 51 |
| Conread position: | 372-532 |
| Cow position: | chr19:31614102-31614267 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 99, 90 |
| Conread position: | 372-532 |
| Cow position: | chr19:31984657-31984491 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 119 |
| Conread position: | 372-532 |
| Cow position: | chr19:36976920-36976753 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 372-532 |
| Cow position: | chr19:38871060-38871227 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-532 |
| Cow position: | chr19:39250259-39250415 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 372-532 |
| Cow position: | chr19:47783774-47783604 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 372-534 |
| Cow position: | chr19:5648673-5648511 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 26, 102 |
| Conread position: | 372-535 |
| Cow position: | chr19:11636946-11636783 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 110, 117 |
| Conread position: | 372-542 |
| Cow position: | chr19:952686-952859 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 137, 90 |
| Conread position: | 372-542 |
| Cow position: | chr19:35344918-35345097 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 372-543 |
| Cow position: | chr19:24003741-24003914 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 112 |
| Conread position: | 372-550 |
| Cow position: | chr19:2342475-2342653 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 373-478 |
| Cow position: | chr19:33261018-33261123 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 373-504 |
| Cow position: | chr19:36318302-36318434 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 373-528 |
| Cow position: | chr19:53738331-53738488 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 373-529 |
| Cow position: | chr19:1713148-1712985 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 85 |
| Conread position: | 373-532 |
| Cow position: | chr19:7029912-7030076 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 123 |
| Conread position: | 373-532 |
| Cow position: | chr19:48478974-48479133 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 136 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 103, 118 |
| Conread position: | 373-550 |
| Cow position: | chr19:31126790-31126976 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 374-532 |
| Cow position: | chr19:22932555-22932390 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 14, 86 |
| Conread position: | 374-541 |
| Cow position: | chr19:2771019-2770850 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 103, 155 |
| Conread position: | 376-494 |
| Cow position: | chr19:21091094-21091213 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 376-531 |
| Cow position: | chr19:28842364-28842202 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 377-509 |
| Cow position: | chr19:3124051-3123923 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 99, 75 |
| Conread position: | 377-531 |
| Cow position: | chr19:54225309-54225154 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 377-532 |
| Cow position: | chr19:4824986-4824823 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 377-532 |
| Cow position: | chr19:11147621-11147466 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 133, 37 |
| Conread position: | 377-532 |
| Cow position: | chr19:39223106-39222952 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 133, 24 |
| Conread position: | 377-539 |
| Cow position: | chr19:20076989-20077154 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 377-552 |
| Cow position: | chr19:38025689-38025871 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 379-532 |
| Cow position: | chr19:43727137-43727291 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 131, 97 |
| Conread position: | 381-531 |
| Cow position: | chr19:46306334-46306188 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 6, 121 |
| Conread position: | 383-491 |
| Cow position: | chr19:42896462-42896575 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 383-532 |
| Cow position: | chr19:24721687-24721834 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 83 |
| Conread position: | 385-511 |
| Cow position: | chr19:42765228-42765102 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 93, 12 |
| Conread position: | 387-514 |
| Cow position: | chr19:30007382-30007510 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 393-526 |
| Cow position: | chr19:24328643-24328779 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 394-513 |
| Cow position: | chr19:42416435-42416321 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 394-532 |
| Cow position: | chr19:11759212-11759070 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 394-532 |
| Cow position: | chr19:12040635-12040777 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 394-532 |
| Cow position: | chr19:25594181-25594315 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 88, 100 |
| Conread position: | 398-516 |
| Cow position: | chr19:47433549-47433431 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 116 |
| Conread position: | 405-532 |
| Cow position: | chr19:41459224-41459354 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 432-552 |
| Cow position: | chr19:35580915-35580797 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 83 |
Show alignments to all cow chromosomes.