Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8057M16.3 |
| Conread position: | 368-524 |
| Cow position: | chr20:35683360-35683204 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 105, 147 |
| Conread position: | 368-532 |
| Cow position: | chr20:23235076-23235243 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 9, 16 |
| Conread position: | 370-532 |
| Cow position: | chr20:27001434-27001595 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 372-478 |
| Cow position: | chr20:34178427-34178322 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 372-484 |
| Cow position: | chr20:37450595-37450712 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-508 |
| Cow position: | chr20:14363092-14362961 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 110, 24 |
| Conread position: | 372-518 |
| Cow position: | chr20:23604685-23604539 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 108, 143 |
| Conread position: | 372-526 |
| Cow position: | chr20:21236703-21236854 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 5 |
| Conread position: | 372-530 |
| Cow position: | chr20:32587408-32587566 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 138, 25 |
| Conread position: | 372-532 |
| Cow position: | chr20:4157467-4157628 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 36, 138 |
| Conread position: | 372-532 |
| Cow position: | chr20:7386605-7386763 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 104, 84 |
| Conread position: | 372-532 |
| Cow position: | chr20:10759427-10759264 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 25, 133 |
| Conread position: | 372-532 |
| Cow position: | chr20:13609019-13608858 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 372-532 |
| Cow position: | chr20:14471526-14471354 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-532 |
| Cow position: | chr20:14679668-14679829 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 137, 31 |
| Conread position: | 372-532 |
| Cow position: | chr20:19266203-19266359 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 138, 90 |
| Conread position: | 372-532 |
| Cow position: | chr20:23163855-23163693 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 60, 141 |
| Conread position: | 372-532 |
| Cow position: | chr20:25146828-25146990 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 29, 143 |
| Conread position: | 372-532 |
| Cow position: | chr20:25823324-25823489 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 60 |
| Conread position: | 372-533 |
| Cow position: | chr20:42254907-42255072 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 23, 52 |
| Conread position: | 372-537 |
| Cow position: | chr20:32668020-32668185 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 103, 156 |
| Conread position: | 372-539 |
| Cow position: | chr20:4204337-4204505 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 102, 18 |
| Conread position: | 372-545 |
| Cow position: | chr20:19865298-19865475 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 106, 7 |
| Conread position: | 372-551 |
| Cow position: | chr20:25274243-25274060 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 373-529 |
| Cow position: | chr20:5763247-5763085 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 28, 134 |
| Conread position: | 373-530 |
| Cow position: | chr20:21518696-21518854 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 9 |
| Conread position: | 373-532 |
| Cow position: | chr20:35924734-35924575 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 109, 81 |
| Conread position: | 373-534 |
| Cow position: | chr20:30855707-30855545 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 118, 32 |
| Conread position: | 373-542 |
| Cow position: | chr20:6903360-6903535 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 23, 135 |
| Conread position: | 373-551 |
| Cow position: | chr20:17670230-17670412 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 24, 141 |
| Conread position: | 374-495 |
| Cow position: | chr20:7376874-7376750 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 88, 112 |
| Conread position: | 374-552 |
| Cow position: | chr20:2456080-2456260 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 108, 134 |
| Conread position: | 375-532 |
| Cow position: | chr20:220663-220821 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 29, 38 |
| Conread position: | 375-532 |
| Cow position: | chr20:26750160-26750002 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 107, 93 |
| Conread position: | 376-529 |
| Cow position: | chr20:4934020-4933861 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 376-529 |
| Cow position: | chr20:39656299-39656452 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 376-532 |
| Cow position: | chr20:9706870-9706706 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 376-532 |
| Cow position: | chr20:20359733-20359571 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 377-532 |
| Cow position: | chr20:33962793-33962942 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 100, 25 |
| Conread position: | 379-532 |
| Cow position: | chr20:33178464-33178314 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 28, 104 |
| Conread position: | 379-544 |
| Cow position: | chr20:17397207-17397040 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 381-506 |
| Cow position: | chr20:40355182-40355306 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 383-499 |
| Cow position: | chr20:21815132-21815019 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 90, 27 |
| Conread position: | 386-552 |
| Cow position: | chr20:6105094-6104920 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 392-530 |
| Cow position: | chr20:39669014-39669153 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 90, 103 |
| Conread position: | 393-532 |
| Cow position: | chr20:3105086-3105228 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 394-532 |
| Cow position: | chr20:8261987-8262126 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 398-532 |
| Cow position: | chr20:7873909-7873774 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 111, 82 |
| Conread position: | 401-529 |
| Cow position: | chr20:11355268-11355395 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 75, 11 |
| Conread position: | 406-513 |
| Cow position: | chr20:26880815-26880707 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 87 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 417-531 |
| Cow position: | chr20:2801772-2801656 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 59, 0 |
Show alignments to all cow chromosomes.