Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8057M16.3 |
| Conread position: | 332-532 |
| Cow position: | chr21:17807110-17806906 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 41 |
| Conread position: | 360-532 |
| Cow position: | chr21:4276549-4276370 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 88 |
| Conread position: | 362-532 |
| Cow position: | chr21:24674775-24674949 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 369-532 |
| Cow position: | chr21:41514872-41515027 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 111, 40 |
| Conread position: | 372-493 |
| Cow position: | chr21:31200230-31200351 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 372-495 |
| Cow position: | chr21:24698547-24698675 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-495 |
| Cow position: | chr21:37848290-37848418 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 372-523 |
| Cow position: | chr21:9353513-9353672 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-524 |
| Cow position: | chr21:21140585-21140729 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 104, 71 |
| Conread position: | 372-524 |
| Cow position: | chr21:48290986-48290836 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 108, 44 |
| Conread position: | 372-527 |
| Cow position: | chr21:13418164-13418011 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 105, 139 |
| Conread position: | 372-527 |
| Cow position: | chr21:18941768-18941606 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 80 |
| Conread position: | 372-530 |
| Cow position: | chr21:25286583-25286745 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 29, 83 |
| Conread position: | 372-530 |
| Cow position: | chr21:47715480-47715314 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 11, 87 |
| Conread position: | 372-531 |
| Cow position: | chr21:8184351-8184519 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 86, 42 |
| Conread position: | 372-532 |
| Cow position: | chr21:4098939-4099099 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 60, 136 |
| Conread position: | 372-532 |
| Cow position: | chr21:4723547-4723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-532 |
| Cow position: | chr21:6316284-6316443 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 372-532 |
| Cow position: | chr21:11675983-11675820 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 139 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 372-532 |
| Cow position: | chr21:12087655-12087829 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 29, 10 |
| Conread position: | 372-532 |
| Cow position: | chr21:27480515-27480677 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 84, 25 |
| Conread position: | 372-532 |
| Cow position: | chr21:31004606-31004441 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 372-532 |
| Cow position: | chr21:31662070-31662232 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 141 |
| Conread position: | 372-532 |
| Cow position: | chr21:33947183-33947022 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 140 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 372-532 |
| Cow position: | chr21:34565143-34564986 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 106, 45 |
| Conread position: | 372-532 |
| Cow position: | chr21:39509320-39509156 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 372-532 |
| Cow position: | chr21:49649700-49649849 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 372-534 |
| Cow position: | chr21:36371554-36371716 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 372-546 |
| Cow position: | chr21:23397780-23397603 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 29, 114 |
| Conread position: | 372-547 |
| Cow position: | chr21:15239349-15239526 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 148 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 105, 175 |
| Conread position: | 372-550 |
| Cow position: | chr21:45923585-45923411 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 138, 101 |
| Conread position: | 372-551 |
| Cow position: | chr21:23801062-23800877 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 28, 177 |
| Conread position: | 372-552 |
| Cow position: | chr21:6058576-6058394 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 103, 71 |
| Conread position: | 373-513 |
| Cow position: | chr21:23786099-23786243 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 373-521 |
| Cow position: | chr21:35997243-35997394 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 373-532 |
| Cow position: | chr21:8671464-8671624 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 21, 111 |
| Conread position: | 373-532 |
| Cow position: | chr21:23397595-23397432 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 373-532 |
| Cow position: | chr21:31576563-31576721 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 107, 146 |
| Conread position: | 374-548 |
| Cow position: | chr21:18782306-18782475 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 375-495 |
| Cow position: | chr21:9588299-9588417 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 101, 51 |
| Conread position: | 375-534 |
| Cow position: | chr21:37718374-37718216 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 78, 35 |
| Conread position: | 376-507 |
| Cow position: | chr21:13256438-13256307 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 100, 63 |
| Conread position: | 376-532 |
| Cow position: | chr21:41197971-41197819 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 378-532 |
| Cow position: | chr21:49654143-49654301 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 379-530 |
| Cow position: | chr21:37121133-37120981 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 131, 18 |
| Conread position: | 380-532 |
| Cow position: | chr21:15742008-15741851 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 382-515 |
| Cow position: | chr21:47823189-47823056 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 5, 107 |
| Conread position: | 383-532 |
| Cow position: | chr21:7186880-7187020 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 384-532 |
| Cow position: | chr21:8282350-8282496 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 92, 33 |
| Conread position: | 384-534 |
| Cow position: | chr21:33714213-33714362 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 92, 24 |
| Conread position: | 391-550 |
| Cow position: | chr21:30053332-30053169 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 17, 67 |
| Conread position: | 394-531 |
| Cow position: | chr21:30150149-30150011 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 116, 22 |
| Conread position: | 396-531 |
| Cow position: | chr21:23974181-23974044 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 397-532 |
| Cow position: | chr21:44093859-44093996 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 84, 44 |
| Conread position: | 400-531 |
| Cow position: | chr21:19860070-19859938 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 410-508 |
| Cow position: | chr21:47774342-47774243 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
Show alignments to all cow chromosomes.