Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8057M16.3 |
| Conread position: | 355-478 |
| Cow position: | chr24:44187501-44187629 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 362-532 |
| Cow position: | chr24:42943153-42942974 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 11, 101 |
| Conread position: | 365-545 |
| Cow position: | chr24:2143721-2143907 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 36, 82 |
| Conread position: | 369-523 |
| Cow position: | chr24:14746624-14746782 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 20, 91 |
| Conread position: | 370-531 |
| Cow position: | chr24:6061422-6061238 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 372-488 |
| Cow position: | chr24:32085950-32085833 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 29, 66 |
| Conread position: | 372-491 |
| Cow position: | chr24:41963119-41962997 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 372-508 |
| Cow position: | chr24:19611990-19612126 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 102, 51 |
| Conread position: | 372-511 |
| Cow position: | chr24:11201665-11201525 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 372-513 |
| Cow position: | chr24:35529890-35530026 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 372-518 |
| Cow position: | chr24:35827716-35827865 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 29, 138 |
| Conread position: | 372-524 |
| Cow position: | chr24:23176719-23176563 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 29, 83 |
| Conread position: | 372-529 |
| Cow position: | chr24:30860615-30860776 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 372-532 |
| Cow position: | chr24:6427683-6427848 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 29, 144 |
| Conread position: | 372-532 |
| Cow position: | chr24:6507788-6507625 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 372-532 |
| Cow position: | chr24:16055533-16055366 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-532 |
| Cow position: | chr24:17981170-17981330 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 103, 32 |
| Conread position: | 372-532 |
| Cow position: | chr24:18786938-18786784 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 104, 79 |
| Conread position: | 372-532 |
| Cow position: | chr24:19754555-19754723 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 105, 92 |
| Conread position: | 372-532 |
| Cow position: | chr24:21041958-21041799 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 110, 79 |
| Conread position: | 372-532 |
| Cow position: | chr24:26455820-26455986 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-532 |
| Cow position: | chr24:27633388-27633544 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 108, 16 |
| Conread position: | 372-532 |
| Cow position: | chr24:28279603-28279768 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-532 |
| Cow position: | chr24:28349554-28349728 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 372-532 |
| Cow position: | chr24:31378735-31378893 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 135 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 372-532 |
| Cow position: | chr24:32158294-32158130 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 140 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 372-532 |
| Cow position: | chr24:34369028-34368862 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 372-532 |
| Cow position: | chr24:36497753-36497591 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 138 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 104, 45 |
| Conread position: | 372-532 |
| Cow position: | chr24:38291839-38292000 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 17, 142 |
| Conread position: | 372-532 |
| Cow position: | chr24:40091598-40091441 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 49, 87 |
| Conread position: | 372-532 |
| Cow position: | chr24:42916399-42916243 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 110, 120 |
| Conread position: | 372-533 |
| Cow position: | chr24:40809383-40809221 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 44, 123 |
| Conread position: | 372-539 |
| Cow position: | chr24:1271903-1271727 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 372-539 |
| Cow position: | chr24:39681834-39682002 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 99, 120 |
| Conread position: | 372-542 |
| Cow position: | chr24:10546052-10546224 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 112, 135 |
| Conread position: | 372-547 |
| Cow position: | chr24:24311485-24311661 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 137, 61 |
| Conread position: | 372-552 |
| Cow position: | chr24:28335584-28335396 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 130 |
| Conread position: | 373-530 |
| Cow position: | chr24:31258355-31258197 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 373-530 |
| Cow position: | chr24:36801360-36801519 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 83, 49 |
| Conread position: | 374-532 |
| Cow position: | chr24:16481322-16481169 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 102, 67 |
| Conread position: | 374-532 |
| Cow position: | chr24:42681718-42681871 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 106, 69 |
| Conread position: | 375-527 |
| Cow position: | chr24:33290336-33290180 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 34 |
| Conread position: | 375-531 |
| Cow position: | chr24:44929334-44929493 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 376-526 |
| Cow position: | chr24:10837877-10838024 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 376-531 |
| Cow position: | chr24:41458104-41458257 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 376-532 |
| Cow position: | chr24:15617487-15617330 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 134, 21 |
| Conread position: | 376-532 |
| Cow position: | chr24:32758774-32758617 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 377-532 |
| Cow position: | chr24:7079768-7079928 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 114 |
| Conread position: | 378-496 |
| Cow position: | chr24:11456853-11456733 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 381-532 |
| Cow position: | chr24:35569169-35569317 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 92, 75 |
| Conread position: | 381-551 |
| Cow position: | chr24:25678015-25678189 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 385-550 |
| Cow position: | chr24:39742810-39742979 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 388-532 |
| Cow position: | chr24:39336166-39336312 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 12, 23 |
| Conread position: | 389-532 |
| Cow position: | chr24:41332584-41332438 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 390-530 |
| Cow position: | chr24:5849376-5849233 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 391-530 |
| Cow position: | chr24:32059456-32059315 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 395-532 |
| Cow position: | chr24:32302700-32302556 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 401-550 |
| Cow position: | chr24:42418834-42418684 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 51 |
| Conread position: | 405-532 |
| Cow position: | chr24:15909635-15909766 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 405-532 |
| Cow position: | chr24:31338865-31338995 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 20, 0 |
Show alignments to all cow chromosomes.