Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8057M16.3 |
| Conread position: | 368-552 |
| Cow position: | chr28:15081918-15081731 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 32, 146 |
| Conread position: | 372-465 |
| Cow position: | chr28:13693762-13693854 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 81 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 372-489 |
| Cow position: | chr28:19133789-19133904 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 104, 38 |
| Conread position: | 372-492 |
| Cow position: | chr28:21873767-21873892 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-508 |
| Cow position: | chr28:8335969-8336110 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 372-513 |
| Cow position: | chr28:29455653-29455517 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 104, 21 |
| Conread position: | 372-517 |
| Cow position: | chr28:25340280-25340429 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 125 |
| Conread position: | 372-527 |
| Cow position: | chr28:11007206-11007368 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 372-529 |
| Cow position: | chr28:11181155-11180994 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 144 |
| Conread position: | 372-530 |
| Cow position: | chr28:8789164-8789324 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 110, 25 |
| Conread position: | 372-530 |
| Cow position: | chr28:31373116-31373277 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 37, 98 |
| Conread position: | 372-531 |
| Cow position: | chr28:11500880-11500719 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 23, 134 |
| Conread position: | 372-532 |
| Cow position: | chr28:31165975-31165808 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-532 |
| Cow position: | chr28:33285103-33284935 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-533 |
| Cow position: | chr28:19253490-19253653 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 22, 83 |
| Conread position: | 372-536 |
| Cow position: | chr28:11200873-11200711 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 104, 84 |
| Conread position: | 372-542 |
| Cow position: | chr28:5406567-5406728 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 164, 15 |
| Conread position: | 372-542 |
| Cow position: | chr28:18934461-18934639 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 22, 71 |
| Conread position: | 372-552 |
| Cow position: | chr28:1202233-1202050 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 152 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 372-552 |
| Cow position: | chr28:4763887-4764072 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 29, 124 |
| Conread position: | 372-552 |
| Cow position: | chr28:6643275-6643086 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 372-552 |
| Cow position: | chr28:9821958-9821782 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 162, 133 |
| Conread position: | 373-525 |
| Cow position: | chr28:20275138-20275295 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 56 |
| Conread position: | 373-530 |
| Cow position: | chr28:6993601-6993445 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 137, 78 |
| Conread position: | 373-532 |
| Cow position: | chr28:4274831-4274671 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 136, 107 |
| Conread position: | 373-532 |
| Cow position: | chr28:7540149-7539984 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 373-532 |
| Cow position: | chr28:15677894-15678061 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 24, 62 |
| Conread position: | 376-552 |
| Cow position: | chr28:9294482-9294299 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 22, 170 |
| Conread position: | 377-532 |
| Cow position: | chr28:12999110-12999268 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 377-532 |
| Cow position: | chr28:15406073-15406228 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 22, 83 |
| Conread position: | 377-532 |
| Cow position: | chr28:20963517-20963354 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 380-531 |
| Cow position: | chr28:28513504-28513656 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 383-532 |
| Cow position: | chr28:1608212-1608364 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 390-516 |
| Cow position: | chr28:22421956-22421829 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 394-526 |
| Cow position: | chr28:20308126-20308263 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 82, 101 |
| Conread position: | 394-526 |
| Cow position: | chr28:22331091-22331220 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 80, 26 |
| Conread position: | 394-531 |
| Cow position: | chr28:17625139-17624998 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 396-532 |
| Cow position: | chr28:3940161-3940018 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 403-508 |
| Cow position: | chr28:26900783-26900677 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 91 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 409-530 |
| Cow position: | chr28:12942494-12942620 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 424-529 |
| Cow position: | chr28:22498437-22498545 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
Show alignments to all cow chromosomes.