Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8057M16.3 |
| Conread position: | 371-532 |
| Cow position: | chr29:1340784-1340950 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 71 |
| Conread position: | 372-500 |
| Cow position: | chr29:18067908-18068038 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 19, 98 |
| Conread position: | 372-508 |
| Cow position: | chr29:18695253-18695392 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 27, 83 |
| Conread position: | 372-512 |
| Cow position: | chr29:13554141-13554283 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 372-513 |
| Cow position: | chr29:24323656-24323797 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 105, 95 |
| Conread position: | 372-524 |
| Cow position: | chr29:16055127-16054976 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 99, 120 |
| Conread position: | 372-530 |
| Cow position: | chr29:29302658-29302497 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 140 |
| Conread position: | 372-532 |
| Cow position: | chr29:942631-942788 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 46 |
| Conread position: | 372-532 |
| Cow position: | chr29:5976783-5976623 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 107, 28 |
| Conread position: | 372-532 |
| Cow position: | chr29:6772134-6772297 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 19, 71 |
| Conread position: | 372-532 |
| Cow position: | chr29:7054420-7054578 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 102, 80 |
| Conread position: | 372-532 |
| Cow position: | chr29:7407899-7407737 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 372-532 |
| Cow position: | chr29:10153795-10153625 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 372-532 |
| Cow position: | chr29:11766722-11766882 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 104, 64 |
| Conread position: | 372-532 |
| Cow position: | chr29:18072944-18073105 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 136 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 372-532 |
| Cow position: | chr29:18963735-18963902 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-532 |
| Cow position: | chr29:19734671-19734829 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 104, 24 |
| Conread position: | 372-532 |
| Cow position: | chr29:22895727-22895895 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 372-533 |
| Cow position: | chr29:12451380-12451531 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 137, 53 |
| Conread position: | 372-539 |
| Cow position: | chr29:26129499-26129664 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 104, 141 |
| Conread position: | 372-542 |
| Cow position: | chr29:25426654-25426484 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 76 |
| Conread position: | 373-518 |
| Cow position: | chr29:14758857-14758712 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 104, 141 |
| Conread position: | 373-532 |
| Cow position: | chr29:11787801-11787953 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 137, 98 |
| Conread position: | 374-532 |
| Cow position: | chr29:34699829-34699678 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 136, 5 |
| Conread position: | 379-532 |
| Cow position: | chr29:7637547-7637393 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 380-532 |
| Cow position: | chr29:23742254-23742098 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 5, 71 |
| Conread position: | 381-532 |
| Cow position: | chr29:19607512-19607357 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 382-532 |
| Cow position: | chr29:27613781-27613634 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 102, 28 |
| Conread position: | 389-529 |
| Cow position: | chr29:7129526-7129384 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 390-546 |
| Cow position: | chr29:41006923-41007077 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 29 |
| Conread position: | 391-529 |
| Cow position: | chr29:32520271-32520412 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 393-542 |
| Cow position: | chr29:11071659-11071507 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 393-550 |
| Cow position: | chr29:9662041-9662203 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 394-524 |
| Cow position: | chr29:19907383-19907511 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 394-550 |
| Cow position: | chr29:10206649-10206806 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 82, 38 |
| Conread position: | 397-527 |
| Cow position: | chr29:4658503-4658376 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 83, 55 |
| Conread position: | 397-530 |
| Cow position: | chr29:32080576-32080712 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 397-532 |
| Cow position: | chr29:942849-942991 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 403-532 |
| Cow position: | chr29:19526-19658 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 403-544 |
| Cow position: | chr29:42686683-42686536 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 405-552 |
| Cow position: | chr29:36196268-36196415 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 120, 77 |
| Conread position: | 418-532 |
| Cow position: | chr29:34993893-34994009 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
Show alignments to all cow chromosomes.