Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8057M16.3 |
| Conread position: | 351-529 |
| Cow position: | chr4:6443110-6442929 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 61 |
| Conread position: | 369-532 |
| Cow position: | chr4:27371867-27371703 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 369-532 |
| Cow position: | chr4:63417705-63417541 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 371-513 |
| Cow position: | chr4:40623103-40622961 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 371-532 |
| Cow position: | chr4:21073158-21072993 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 85 |
| Conread position: | 371-542 |
| Cow position: | chr4:24755559-24755736 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 51, 68 |
| Conread position: | 372-500 |
| Cow position: | chr4:9845913-9846041 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 97, 90 |
| Conread position: | 372-509 |
| Cow position: | chr4:48499817-48499953 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 110, 37 |
| Conread position: | 372-518 |
| Cow position: | chr4:3267867-3267722 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 19, 108 |
| Conread position: | 372-524 |
| Cow position: | chr4:53752521-53752670 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 104, 116 |
| Conread position: | 372-530 |
| Cow position: | chr4:35870200-35870363 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 33, 131 |
| Conread position: | 372-531 |
| Cow position: | chr4:5797961-5798125 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-531 |
| Cow position: | chr4:9800001-9800163 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 372-531 |
| Cow position: | chr4:30131335-30131496 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 107, 51 |
| Conread position: | 372-531 |
| Cow position: | chr4:60030901-60031064 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 29, 83 |
| Conread position: | 372-532 |
| Cow position: | chr4:1374357-1374515 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 106 |
| Conread position: | 372-532 |
| Cow position: | chr4:10992202-10992039 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 372-532 |
| Cow position: | chr4:17304398-17304229 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 29, 42 |
| Conread position: | 372-532 |
| Cow position: | chr4:17478300-17478144 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 104, 7 |
| Conread position: | 372-532 |
| Cow position: | chr4:19307256-19307416 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 30, 46 |
| Conread position: | 372-532 |
| Cow position: | chr4:21365404-21365564 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 104, 50 |
| Conread position: | 372-532 |
| Cow position: | chr4:22235324-22235487 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 50 |
| Conread position: | 372-532 |
| Cow position: | chr4:22528388-22528226 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 105, 157 |
| Conread position: | 372-532 |
| Cow position: | chr4:23494916-23495070 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 108 |
| Conread position: | 372-532 |
| Cow position: | chr4:23758803-23758963 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 139 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 104, 10 |
| Conread position: | 372-532 |
| Cow position: | chr4:24415561-24415715 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 372-532 |
| Cow position: | chr4:35471317-35471479 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 372-532 |
| Cow position: | chr4:36813373-36813538 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 372-532 |
| Cow position: | chr4:36945197-36945032 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 372-532 |
| Cow position: | chr4:38877757-38877929 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 372-532 |
| Cow position: | chr4:40433907-40433744 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 29, 121 |
| Conread position: | 372-532 |
| Cow position: | chr4:44279941-44279774 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-532 |
| Cow position: | chr4:44665377-44665210 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 372-532 |
| Cow position: | chr4:45919033-45919195 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 372-532 |
| Cow position: | chr4:51433405-51433572 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 372-532 |
| Cow position: | chr4:52226000-52226165 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 372-532 |
| Cow position: | chr4:65406370-65406215 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 105, 75 |
| Conread position: | 372-534 |
| Cow position: | chr4:29709771-29709596 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 372-539 |
| Cow position: | chr4:64071074-64070906 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 54, 32 |
| Conread position: | 372-546 |
| Cow position: | chr4:22249450-22249272 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 146 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 372-550 |
| Cow position: | chr4:54146467-54146285 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 104, 42 |
| Conread position: | 372-551 |
| Cow position: | chr4:65604474-65604294 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 148 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 372-552 |
| Cow position: | chr4:30639-30458 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 104, 144 |
| Conread position: | 373-532 |
| Cow position: | chr4:2121401-2121237 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 373-532 |
| Cow position: | chr4:9547955-9548114 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 103, 78 |
| Conread position: | 373-532 |
| Cow position: | chr4:10836172-10836338 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 162 |
| Conread position: | 373-532 |
| Cow position: | chr4:21250036-21249866 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 22, 164 |
| Conread position: | 373-540 |
| Cow position: | chr4:22115605-22115775 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 114, 107 |
| Conread position: | 373-549 |
| Cow position: | chr4:1799906-1800084 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 373-552 |
| Cow position: | chr4:20279324-20279509 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 28, 151 |
| Conread position: | 374-518 |
| Cow position: | chr4:26373676-26373529 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 70 |
| Conread position: | 374-533 |
| Cow position: | chr4:50769770-50769604 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 374-534 |
| Cow position: | chr4:31172674-31172836 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 102, 57 |
| Conread position: | 375-529 |
| Cow position: | chr4:59719609-59719758 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 101, 10 |
| Conread position: | 375-532 |
| Cow position: | chr4:10837382-10837220 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 44 |
| Conread position: | 375-532 |
| Cow position: | chr4:18439567-18439414 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 105, 122 |
| Conread position: | 375-532 |
| Cow position: | chr4:21151600-21151757 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 70 |
| Conread position: | 375-532 |
| Cow position: | chr4:37880933-37881093 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 26, 119 |
| Conread position: | 376-482 |
| Cow position: | chr4:24497826-24497719 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 376-500 |
| Cow position: | chr4:45952380-45952260 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 108, 41 |
| Conread position: | 376-529 |
| Cow position: | chr4:21862871-21862711 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 376-531 |
| Cow position: | chr4:30671411-30671254 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 100, 29 |
| Conread position: | 376-532 |
| Cow position: | chr4:23311261-23311108 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 100, 77 |
| Conread position: | 376-532 |
| Cow position: | chr4:39767353-39767511 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 98, 72 |
| Conread position: | 385-552 |
| Cow position: | chr4:62411865-62412033 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 127, 153 |
| Conread position: | 391-527 |
| Cow position: | chr4:20161466-20161325 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 391-529 |
| Cow position: | chr4:27561555-27561700 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 392-531 |
| Cow position: | chr4:7315232-7315375 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 394-530 |
| Cow position: | chr4:34762313-34762176 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 90, 98 |
| Conread position: | 394-532 |
| Cow position: | chr4:45115758-45115617 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 394-544 |
| Cow position: | chr4:54797517-54797367 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 114, 135 |
| Conread position: | 417-532 |
| Cow position: | chr4:9912280-9912166 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 417-532 |
| Cow position: | chr4:37611242-37611127 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 62, 94 |
| Conread position: | 420-531 |
| Cow position: | chr4:24187556-24187441 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 421-530 |
| Cow position: | chr4:49658598-49658709 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 61, 8 |
| Conread position: | 423-530 |
| Cow position: | chr4:10463877-10463767 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 53, 0 |
Show alignments to all cow chromosomes.