Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8057M16.3 |
| Conread position: | 350-527 |
| Cow position: | chr7:31224373-31224202 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 126, 23 |
| Conread position: | 355-552 |
| Cow position: | chr7:19423594-19423794 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 63, 38 |
| Conread position: | 367-533 |
| Cow position: | chr7:67761436-67761601 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 142, 46 |
| Conread position: | 372-478 |
| Cow position: | chr7:5249865-5249759 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 372-482 |
| Cow position: | chr7:20355998-20356107 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 372-493 |
| Cow position: | chr7:7507599-7507720 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 105, 86 |
| Conread position: | 372-502 |
| Cow position: | chr7:58773938-58774064 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 104, 40 |
| Conread position: | 372-506 |
| Cow position: | chr7:34441138-34441004 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 110, 74 |
| Conread position: | 372-513 |
| Cow position: | chr7:17922325-17922469 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 25, 49 |
| Conread position: | 372-513 |
| Cow position: | chr7:47874938-47874799 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 372-517 |
| Cow position: | chr7:8786536-8786387 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 36, 56 |
| Conread position: | 372-520 |
| Cow position: | chr7:3748882-3748728 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 372-526 |
| Cow position: | chr7:25445441-25445601 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-530 |
| Cow position: | chr7:10345419-10345258 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 372-530 |
| Cow position: | chr7:12424590-12424756 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 372-530 |
| Cow position: | chr7:19880999-19880836 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 372-531 |
| Cow position: | chr7:14044021-14044178 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 81, 85 |
| Conread position: | 372-531 |
| Cow position: | chr7:41727992-41728152 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 104, 56 |
| Conread position: | 372-532 |
| Cow position: | chr7:4512767-4512608 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 102, 30 |
| Conread position: | 372-532 |
| Cow position: | chr7:8074055-8073890 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 372-532 |
| Cow position: | chr7:10099314-10099149 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 372-532 |
| Cow position: | chr7:11872560-11872386 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-532 |
| Cow position: | chr7:12233063-12233237 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 372-532 |
| Cow position: | chr7:12755107-12754944 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 372-532 |
| Cow position: | chr7:13587226-13587392 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 25, 93 |
| Conread position: | 372-532 |
| Cow position: | chr7:19399632-19399470 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 35, 143 |
| Conread position: | 372-532 |
| Cow position: | chr7:24521299-24521461 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 30, 83 |
| Conread position: | 372-532 |
| Cow position: | chr7:25914442-25914279 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 141 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 372-532 |
| Cow position: | chr7:26907986-26907829 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 137, 15 |
| Conread position: | 372-532 |
| Cow position: | chr7:30404523-30404366 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 108, 81 |
| Conread position: | 372-532 |
| Cow position: | chr7:37906313-37906147 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 372-532 |
| Cow position: | chr7:40192792-40192960 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 144 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-532 |
| Cow position: | chr7:43234400-43234233 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-532 |
| Cow position: | chr7:47172662-47172499 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 102, 38 |
| Conread position: | 372-532 |
| Cow position: | chr7:48648576-48648411 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 132, 38 |
| Conread position: | 372-532 |
| Cow position: | chr7:53743852-53743689 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 372-532 |
| Cow position: | chr7:58490130-58490289 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 104, 143 |
| Conread position: | 372-532 |
| Cow position: | chr7:62102642-62102801 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 104, 129 |
| Conread position: | 372-535 |
| Cow position: | chr7:22153206-22153377 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 55, 88 |
| Conread position: | 372-535 |
| Cow position: | chr7:32277586-32277751 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 104, 44 |
| Conread position: | 372-537 |
| Cow position: | chr7:664208-664038 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 372-538 |
| Cow position: | chr7:68791862-68792024 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 55, 6 |
| Conread position: | 372-539 |
| Cow position: | chr7:37364838-37365003 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 106, 83 |
| Conread position: | 372-542 |
| Cow position: | chr7:20108944-20108770 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 99, 10 |
| Conread position: | 372-542 |
| Cow position: | chr7:62610335-62610513 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-545 |
| Cow position: | chr7:55076651-55076484 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 373-518 |
| Cow position: | chr7:57260198-57260053 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 107, 78 |
| Conread position: | 373-532 |
| Cow position: | chr7:25684995-25684838 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 111, 134 |
| Conread position: | 373-532 |
| Cow position: | chr7:39603371-39603534 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 373-532 |
| Cow position: | chr7:43215556-43215725 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 373-532 |
| Cow position: | chr7:48289418-48289578 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 31, 83 |
| Conread position: | 373-532 |
| Cow position: | chr7:59246001-59246162 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 29, 142 |
| Conread position: | 373-550 |
| Cow position: | chr7:53005398-53005577 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 103, 153 |
| Conread position: | 373-551 |
| Cow position: | chr7:51321785-51321962 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 103, 82 |
| Conread position: | 375-498 |
| Cow position: | chr7:8826866-8826989 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 375-529 |
| Cow position: | chr7:21197333-21197178 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 17, 121 |
| Conread position: | 375-530 |
| Cow position: | chr7:64140090-64139936 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 135, 45 |
| Conread position: | 375-532 |
| Cow position: | chr7:26195757-26195596 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 375-534 |
| Cow position: | chr7:50401771-50401610 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 375-541 |
| Cow position: | chr7:26466791-26466963 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 24, 52 |
| Conread position: | 376-532 |
| Cow position: | chr7:36746378-36746534 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 100, 25 |
| Conread position: | 376-532 |
| Cow position: | chr7:55714124-55714282 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 103, 82 |
| Conread position: | 377-530 |
| Cow position: | chr7:58703832-58703985 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 377-542 |
| Cow position: | chr7:19051271-19051111 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 104, 29 |
| Conread position: | 379-532 |
| Cow position: | chr7:1733145-1732992 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 98, 72 |
| Conread position: | 381-532 |
| Cow position: | chr7:35504600-35504753 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 381-532 |
| Cow position: | chr7:40261890-40261740 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 131 |
| Conread position: | 389-532 |
| Cow position: | chr7:39494987-39494846 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 121, 62 |
| Conread position: | 392-532 |
| Cow position: | chr7:7486710-7486572 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 394-536 |
| Cow position: | chr7:59713787-59713927 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 80, 117 |
| Conread position: | 395-532 |
| Cow position: | chr7:25857400-25857262 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 396-529 |
| Cow position: | chr7:34027840-34027969 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 80, 44 |
| Conread position: | 396-542 |
| Cow position: | chr7:4264460-4264310 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 398-532 |
| Cow position: | chr7:62470868-62471003 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 111, 82 |
| Conread position: | 399-532 |
| Cow position: | chr7:3134093-3133957 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 403-532 |
| Cow position: | chr7:26665489-26665358 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 404-532 |
| Cow position: | chr7:57319836-57319704 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 405-529 |
| Cow position: | chr7:34018211-34018335 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 71, 24 |
| Conread position: | 415-534 |
| Cow position: | chr7:60722745-60722628 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 61, 43 |
| Conread position: | 427-532 |
| Cow position: | chr7:38068578-38068685 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 428-532 |
| Cow position: | chr7:6992772-6992670 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 61 |
Show alignments to all cow chromosomes.