Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8057M16.3 |
| Conread position: | 362-507 |
| Cow position: | chr9:21462833-21462978 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 122, 139 |
| Conread position: | 367-535 |
| Cow position: | chr9:34204161-34203986 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 368-529 |
| Cow position: | chr9:18237133-18237294 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 106, 83 |
| Conread position: | 368-550 |
| Cow position: | chr9:27292248-27292433 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 33, 163 |
| Conread position: | 371-497 |
| Cow position: | chr9:39108977-39109106 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 63, 55 |
| Conread position: | 372-474 |
| Cow position: | chr9:8591135-8591036 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 372-507 |
| Cow position: | chr9:41957829-41957693 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 372-507 |
| Cow position: | chr9:48576620-48576755 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 28, 73 |
| Conread position: | 372-512 |
| Cow position: | chr9:59761607-59761752 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 372-516 |
| Cow position: | chr9:38546438-38546296 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 75 |
| Conread position: | 372-527 |
| Cow position: | chr9:34310051-34309893 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 372-527 |
| Cow position: | chr9:48773376-48773218 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 45, 143 |
| Conread position: | 372-529 |
| Cow position: | chr9:32817115-32817277 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-530 |
| Cow position: | chr9:32847912-32847751 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 372-530 |
| Cow position: | chr9:54437291-54437122 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-530 |
| Cow position: | chr9:58669403-58669243 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 105, 10 |
| Conread position: | 372-531 |
| Cow position: | chr9:2863470-2863310 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 122 |
| Conread position: | 372-531 |
| Cow position: | chr9:8657404-8657570 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 372-531 |
| Cow position: | chr9:18110843-18111000 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 372-531 |
| Cow position: | chr9:20200320-20200160 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 130 |
| Conread position: | 372-531 |
| Cow position: | chr9:24837562-24837402 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 24, 141 |
| Conread position: | 372-531 |
| Cow position: | chr9:43911955-43911794 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 6, 62 |
| Conread position: | 372-531 |
| Cow position: | chr9:46252844-46252684 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 104, 57 |
| Conread position: | 372-531 |
| Cow position: | chr9:54206298-54206464 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 372-532 |
| Cow position: | chr9:3169500-3169658 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 59, 139 |
| Conread position: | 372-532 |
| Cow position: | chr9:5172353-5172193 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 107, 38 |
| Conread position: | 372-532 |
| Cow position: | chr9:7305851-7305692 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 142, 7 |
| Conread position: | 372-532 |
| Cow position: | chr9:9761065-9760904 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 104, 48 |
| Conread position: | 372-532 |
| Cow position: | chr9:12499037-12498870 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-532 |
| Cow position: | chr9:15684761-15684927 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 29, 74 |
| Conread position: | 372-532 |
| Cow position: | chr9:20839651-20839488 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 372-532 |
| Cow position: | chr9:20896923-20896760 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 66 |
| Conread position: | 372-532 |
| Cow position: | chr9:25469073-25468915 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 110, 57 |
| Conread position: | 372-532 |
| Cow position: | chr9:30020002-30019843 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 136 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 372-532 |
| Cow position: | chr9:33668756-33668585 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 372-532 |
| Cow position: | chr9:35708596-35708759 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 138 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 372-532 |
| Cow position: | chr9:36827722-36827560 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 372-532 |
| Cow position: | chr9:38927106-38926949 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 58, 75 |
| Conread position: | 372-532 |
| Cow position: | chr9:39152656-39152820 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 372-532 |
| Cow position: | chr9:40007884-40007722 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 137 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 372-532 |
| Cow position: | chr9:43037509-43037342 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 372-532 |
| Cow position: | chr9:49651749-49651591 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 372-532 |
| Cow position: | chr9:50827905-50828057 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 372-532 |
| Cow position: | chr9:53794505-53794668 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 23, 58 |
| Conread position: | 372-532 |
| Cow position: | chr9:64007859-64008020 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 372-534 |
| Cow position: | chr9:23042801-23042638 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 140 |
| Conread position: | 372-534 |
| Cow position: | chr9:47836991-47837165 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 170 |
| Conread position: | 372-537 |
| Cow position: | chr9:10127646-10127812 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 81, 37 |
| Conread position: | 372-539 |
| Cow position: | chr9:11102776-11102946 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 16, 167 |
| Conread position: | 372-542 |
| Cow position: | chr9:15006727-15006897 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 147 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 86 |
| Conread position: | 372-552 |
| Cow position: | chr9:19382353-19382165 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 373-532 |
| Cow position: | chr9:3845187-3845340 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 373-532 |
| Cow position: | chr9:21537293-21537129 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 373-532 |
| Cow position: | chr9:26645938-26645780 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 106, 16 |
| Conread position: | 373-532 |
| Cow position: | chr9:32266362-32266526 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 373-532 |
| Cow position: | chr9:43926088-43926245 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 373-533 |
| Cow position: | chr9:17110794-17110632 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 142 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 103, 9 |
| Conread position: | 373-534 |
| Cow position: | chr9:32115575-32115741 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 53 |
| Conread position: | 373-535 |
| Cow position: | chr9:20039109-20039272 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 136, 89 |
| Conread position: | 373-539 |
| Cow position: | chr9:20668399-20668240 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 103, 45 |
| Conread position: | 374-532 |
| Cow position: | chr9:5340634-5340477 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 25, 82 |
| Conread position: | 375-524 |
| Cow position: | chr9:48133752-48133601 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 77, 10 |
| Conread position: | 375-532 |
| Cow position: | chr9:6203767-6203925 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 376-528 |
| Cow position: | chr9:15033925-15033772 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 100, 37 |
| Conread position: | 376-530 |
| Cow position: | chr9:56861028-56860878 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 134, 13 |
| Conread position: | 376-532 |
| Cow position: | chr9:14184684-14184530 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 134, 109 |
| Conread position: | 376-532 |
| Cow position: | chr9:50522325-50522476 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 100, 75 |
| Conread position: | 376-534 |
| Cow position: | chr9:3959089-3958932 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 115 |
| Conread position: | 376-536 |
| Cow position: | chr9:34725491-34725652 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 26, 45 |
| Conread position: | 378-532 |
| Cow position: | chr9:33059255-33059412 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 379-532 |
| Cow position: | chr9:42173170-42173325 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 97, 116 |
| Conread position: | 381-513 |
| Cow position: | chr9:18093638-18093762 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 95, 32 |
| Conread position: | 381-530 |
| Cow position: | chr9:33999131-33999283 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 381-531 |
| Cow position: | chr9:43697137-43697283 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 15, 6 |
| Conread position: | 394-517 |
| Cow position: | chr9:35278077-35277953 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 394-544 |
| Cow position: | chr9:39428799-39428954 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 394-550 |
| Cow position: | chr9:62330997-62331157 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 397-529 |
| Cow position: | chr9:59924547-59924414 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 85, 32 |
| Conread position: | 401-551 |
| Cow position: | chr9:10676381-10676535 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 76, 15 |
| Conread position: | 402-532 |
| Cow position: | chr9:6346987-6346856 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 107, 80 |
| Conread position: | 405-528 |
| Cow position: | chr9:2391332-2391205 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 411-532 |
| Cow position: | chr9:21566627-21566751 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 428-551 |
| Cow position: | chr9:43944526-43944654 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
Show alignments to all cow chromosomes.