Cow genome map

Conread name: Ss1.1-Pig4-TMW8057M16.3

Conread position: 335-513
Cow position: chrX:3951035-3951216 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 28, 0

Conread position: 355-532
Cow position: chrX:46028744-46028565 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 27, 13

Conread position: 369-523
Cow position: chrX:10289599-10289442 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 132
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 25, 13

Conread position: 369-536
Cow position: chrX:8103259-8103093 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 6, 36

Conread position: 371-532
Cow position: chrX:16291991-16291821 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 26, 89

Conread position: 371-549
Cow position: chrX:19879072-19879250 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 113, 26

Conread position: 372-466
Cow position: chrX:7345117-7345211 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 372-490
Cow position: chrX:32743567-32743685 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 372-507
Cow position: chrX:43980769-43980906 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 109, 0

Conread position: 372-511
Cow position: chrX:27176283-27176140 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 29, 0

Conread position: 372-514
Cow position: chrX:630280-630133 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 118
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 29, 0

Conread position: 372-515
Cow position: chrX:6656416-6656560 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 88, 0

Conread position: 372-516
Cow position: chrX:17042712-17042861 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 121
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 25, 0

Conread position: 372-518
Cow position: chrX:1978543-1978688 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 104, 11

Conread position: 372-519
Cow position: chrX:159726-159575 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 125
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 104, 0

Conread position: 372-521
Cow position: chrX:18216303-18216452 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 71, 15

Conread position: 372-527
Cow position: chrX:12304590-12304752 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 29, 128

Conread position: 372-530
Cow position: chrX:25338217-25338379 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 133
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 29, 147

Conread position: 372-532
Cow position: chrX:8780073-8780240 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 28, 0

Conread position: 372-532
Cow position: chrX:8917876-8918030 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 138, 86

Conread position: 372-532
Cow position: chrX:9839258-9839418 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 130
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 372-532
Cow position: chrX:10302369-10302534 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 28, 145

Conread position: 372-532
Cow position: chrX:15049524-15049679 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 105, 79

Conread position: 372-532
Cow position: chrX:15329672-15329839 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 23, 0

Conread position: 372-532
Cow position: chrX:18142424-18142263 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 133
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 22, 142

Conread position: 372-532
Cow position: chrX:18287047-18286886 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 22, 114

Conread position: 372-532
Cow position: chrX:19678238-19678083 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 127
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 110, 75

Conread position: 372-532
Cow position: chrX:25388208-25388055 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 83, 0

Conread position: 372-532
Cow position: chrX:25713825-25713992 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 134
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 29, 0

Conread position: 372-532
Cow position: chrX:27287703-27287542 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 140
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 372-532
Cow position: chrX:27771543-27771381 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 112, 75

Conread position: 372-532
Cow position: chrX:30980106-30979939 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 27, 0

Conread position: 372-532
Cow position: chrX:36009883-36009719 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 22, 144

Conread position: 372-532
Cow position: chrX:36840896-36841057 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 134
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 60, 0

Conread position: 372-532
Cow position: chrX:41083944-41084113 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 22, 89

Conread position: 372-532
Cow position: chrX:42011310-42011478 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 26, 0

Conread position: 372-532
Cow position: chrX:46084000-46084169 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 138
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 32, 0

Conread position: 372-532
Cow position: chrX:48089375-48089207 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 372-534
Cow position: chrX:21640459-21640622 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 133
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 151, 0

Conread position: 372-534
Cow position: chrX:28787382-28787539 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 31, 80

Conread position: 372-534
Cow position: chrX:33802974-33802809 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 134
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 104, 0

Conread position: 372-535
Cow position: chrX:43426324-43426490 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 28, 144

Conread position: 372-536
Cow position: chrX:31602687-31602856 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 29, 0

Conread position: 372-549
Cow position: chrX:6674890-6674698 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 23, 81

Conread position: 372-550
Cow position: chrX:6563553-6563733 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 143
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 104, 0

Conread position: 372-550
Cow position: chrX:40789241-40789420 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 146
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 102, 49

Conread position: 372-552
Cow position: chrX:23414339-23414158 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 30, 75

Conread position: 373-523
Cow position: chrX:4446740-4446886 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 123
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 106, 113

Conread position: 373-523
Cow position: chrX:7497273-7497424 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 130
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 29, 82

Conread position: 373-531
Cow position: chrX:21664689-21664529 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 135
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 18, 141

Conread position: 373-531
Cow position: chrX:23179249-23179086 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 135
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 23, 114

Conread position: 373-532
Cow position: chrX:32431654-32431816 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 89

Conread position: 373-532
Cow position: chrX:34355935-34355779 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 136, 41

Conread position: 373-549
Cow position: chrX:38999886-39000062 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 150
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 103, 28

Conread position: 374-520
Cow position: chrX:16419182-16419329 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 122
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 102, 0

Conread position: 374-530
Cow position: chrX:7425501-7425660 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 130
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 102, 0

Conread position: 374-532
Cow position: chrX:9539358-9539516 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 129
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 374-532
Cow position: chrX:29874339-29874175 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 134
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 20, 91

Conread position: 374-540
Cow position: chrX:37760908-37761076 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 136, 69

Conread position: 374-546
Cow position: chrX:34470751-34470923 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 145
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 162, 12

Conread position: 375-532
Cow position: chrX:6203573-6203738 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 23, 0

Conread position: 375-552
Cow position: chrX:45980947-45981127 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 33, 140

Conread position: 376-532
Cow position: chrX:18417267-18417110 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 100, 0

Conread position: 376-532
Cow position: chrX:29675533-29675696 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 376-550
Cow position: chrX:26619080-26618902 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 103, 0

Conread position: 377-503
Cow position: chrX:24747149-24747020 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 11, 39

Conread position: 378-512
Cow position: chrX:47744127-47744262 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 102, 0

Conread position: 378-549
Cow position: chrX:26940469-26940304 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 95, 39

Conread position: 379-527
Cow position: chrX:31340747-31340902 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 379-532
Cow position: chrX:33585539-33585685 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 97, 18

Conread position: 379-532
Cow position: chrX:47178182-47178339 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 22, 65

Conread position: 380-532
Cow position: chrX:16514225-16514078 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 130
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 130, 88

Conread position: 381-532
Cow position: chrX:20377012-20377160 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 6, 71

Conread position: 381-536
Cow position: chrX:2300966-2301122 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 6, 127

Conread position: 382-532
Cow position: chrX:22326162-22326311 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 5, 126

Conread position: 382-542
Cow position: chrX:2648168-2648010 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 101, 129

Conread position: 384-532
Cow position: chrX:5046871-5046717 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 124
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 92, 0

Conread position: 386-530
Cow position: chrX:17952928-17952781 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 96, 0

Conread position: 386-532
Cow position: chrX:17964475-17964329 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 46, 127

Conread position: 393-542
Cow position: chrX:47866044-47865891 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 83, 0

Conread position: 394-532
Cow position: chrX:488734-488872 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 122
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 82, 48

Conread position: 395-532
Cow position: chrX:17895873-17895739 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 59, 0

Conread position: 400-532
Cow position: chrX:31273264-31273399 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 112
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 75, 0

Conread position: 401-532
Cow position: chrX:4545290-4545159 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 115
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 81, 28

Conread position: 409-530
Cow position: chrX:30069356-30069477 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 67, 87

Conread position: 420-513
Cow position: chrX:20344234-20344141 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 79
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.