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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8058B20.5
        

               
Conread position:
               
1-111
               

               
Cow position:
               
chr6:61608530-61608640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-124
               

               
Cow position:
               
chr6:47640414-47640291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr6:4702805-4702682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr6:32853206-32853330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr6:57328375-57328251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
1-136
               

               
Cow position:
               
chr6:29248498-29248630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
1-147
               

               
Cow position:
               
chr6:53090027-53090172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
1-149
               

               
Cow position:
               
chr6:1002245-1002097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr6:6400972-6401119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr6:58597488-58597335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
1-155
               

               
Cow position:
               
chr6:23466015-23465861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
131, 68
               

               
Conread position:
               
1-161
               

               
Cow position:
               
chr6:43651770-43651929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
1-163
               

               
Cow position:
               
chr6:50976066-50976231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
126, 159
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr6:54471913-54471749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
45, 62
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr6:528266-528089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
176, 131
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr6:1871180-1870975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr6:34119335-34119140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr6:61524187-61523981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr6:60516844-60517062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
141, 69
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr6:63720218-63720416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr6:41375789-41375998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
9, 58
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr6:49398601-49398395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr6:49437351-49437567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
143, 172
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr6:9302699-9302486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr6:5609427-5609204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 37
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr6:10105961-10105745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr6:581728-581501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
100, 50
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr6:1866750-1866970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
178, 23
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr6:18118031-18117809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
206, 54
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr6:19259324-19259119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
178, 117
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr6:28973019-28972794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 114
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr6:46860149-46859932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr6:50467152-50467377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr6:65702395-65702170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
128, 110
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr6:1941814-1941594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 58
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr6:32867199-32866981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 8
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr6:17068630-17068414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr6:62056632-62056852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr6:30023903-30024119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr6:37332126-37332354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
74, 193
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr6:120265-120481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr6:36202839-36203065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
125, 63
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr6:17704849-17705081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr6:59620671-59620903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
9, 25
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr6:29485100-29485329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
62, 224
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr6:5820229-5820013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr6:25615077-25614841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr6:46465839-46466066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr6:61168773-61169010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
136, 203
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr6:694133-693895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr6:17414429-17414199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
49, 168
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr6:25435016-25434776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
137, 58
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr6:47540831-47540588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
41, 121
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr6:53546053-53546281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 132
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr6:60468256-60468481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr6:67451353-67451122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 193
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr6:48010505-48010271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
134, 60
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr6:18955057-18954840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
78, 20
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr6:19264481-19264248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 193
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr6:2547273-2547515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr6:3595808-3596048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr6:13653371-13653599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
135, 60
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr6:60273993-60273758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 206
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr6:2078797-2078561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 137
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr6:13040459-13040708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
132, 13
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr6:53460549-53460318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 141
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr6:26728513-26728288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr6:44194531-44194300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr6:66570458-66570684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
218, 118
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr6:21231542-21231772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
220, 119
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr6:61269330-61269577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
109, 120
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr6:44636481-44636251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
222, 43
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr6:3351046-3351294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 164
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr6:55282276-55282023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 132
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr6:29775640-29775891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
86, 109
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr6:47520071-47520325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr6:60474147-60474399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
9, 226
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr6:47574924-47575164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr6:31535551-31535250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
276, 119
               

               
Conread position:
               
2-142
               

               
Cow position:
               
chr6:21869630-21869490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-221
               

               
Cow position:
               
chr6:16700280-16700493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
140, 91
               

               
Conread position:
               
2-226
               

               
Cow position:
               
chr6:55721641-55721852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
210, 14
               

               
Conread position:
               
2-232
               

               
Cow position:
               
chr6:66839217-66839443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr6:6201444-6201690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr6:15243275-15243516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
139, 195
               

               
Conread position:
               
3-242
               

               
Cow position:
               
chr6:15937835-15937590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
4-125
               

               
Cow position:
               
chr6:66375312-66375191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-126
               

               
Cow position:
               
chr6:16423723-16423844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
4-126
               

               
Cow position:
               
chr6:59770249-59770366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
4-187
               

               
Cow position:
               
chr6:31078855-31078663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
34, 120
               

               
Conread position:
               
4-219
               

               
Cow position:
               
chr6:67069794-67069578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
79, 22
               

               
Conread position:
               
4-221
               

               
Cow position:
               
chr6:50504477-50504695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
4-228
               

               
Cow position:
               
chr6:4383501-4383719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
4-232
               

               
Cow position:
               
chr6:48097583-48097353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 191
               

               
Conread position:
               
4-232
               

               
Cow position:
               
chr6:54831497-54831728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
128, 114
               

               
Conread position:
               
4-236
               

               
Cow position:
               
chr6:23696021-23696248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 0
               

               
Conread position:
               
4-236
               

               
Cow position:
               
chr6:58459742-58459973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
216, 110
               

               
Conread position:
               
4-246
               

               
Cow position:
               
chr6:21470408-21470170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
4-257
               

               
Cow position:
               
chr6:57571500-57571748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
203, 178
               

               
Conread position:
               
5-224
               

               
Cow position:
               
chr6:67451625-67451422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
5-232
               

               
Cow position:
               
chr6:24468374-24468149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr6:60850722-60850953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 213
               

               
Conread position:
               
6-155
               

               
Cow position:
               
chr6:66531798-66531652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
6-221
               

               
Cow position:
               
chr6:22205004-22204785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
123, 119
               

               
Conread position:
               
6-226
               

               
Cow position:
               
chr6:36470539-36470334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
6-238
               

               
Cow position:
               
chr6:24110305-24110543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
137, 45
               

               
Conread position:
               
6-241
               

               
Cow position:
               
chr6:65264519-65264289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
210, 41
               

               
Conread position:
               
7-139
               

               
Cow position:
               
chr6:42565712-42565843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
7-140
               

               
Cow position:
               
chr6:18422966-18422833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
68, 50
               

               
Conread position:
               
7-142
               

               
Cow position:
               
chr6:6343450-6343588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 129
               

               
Conread position:
               
7-142
               

               
Cow position:
               
chr6:54573283-54573419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
7-146
               

               
Cow position:
               
chr6:67805991-67805852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
7-147
               

               
Cow position:
               
chr6:60057631-60057495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
7-148
               

               
Cow position:
               
chr6:47339332-47339191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
7-149
               

               
Cow position:
               
chr6:7568147-7568289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
7-149
               

               
Cow position:
               
chr6:51969101-51969242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
7-150
               

               
Cow position:
               
chr6:54990977-54990834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
7-150
               

               
Cow position:
               
chr6:67214773-67214916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
7-154
               

               
Cow position:
               
chr6:47799317-47799464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
7-154
               

               
Cow position:
               
chr6:54867541-54867688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
7-155
               

               
Cow position:
               
chr6:35993608-35993755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
7-155
               

               
Cow position:
               
chr6:55535725-55535580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
7-161
               

               
Cow position:
               
chr6:20196275-20196126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
7-161
               

               
Cow position:
               
chr6:38218692-38218842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
7-174
               

               
Cow position:
               
chr6:21590731-21590897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
7-176
               

               
Cow position:
               
chr6:61575849-61576008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
7-188
               

               
Cow position:
               
chr6:69153437-69153618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
150, 21
               

               
Conread position:
               
7-191
               

               
Cow position:
               
chr6:40774308-40774125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
165, 137
               

               
Conread position:
               
7-191
               

               
Cow position:
               
chr6:50984246-50984434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
135, 111
               

               
Conread position:
               
7-201
               

               
Cow position:
               
chr6:35842683-35842879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
140, 13
               

               
Conread position:
               
7-203
               

               
Cow position:
               
chr6:28483039-28483238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
7-204
               

               
Cow position:
               
chr6:57287637-57287449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
7-207
               

               
Cow position:
               
chr6:2584966-2585166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
7-207
               

               
Cow position:
               
chr6:41733650-41733860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
7-209
               

               
Cow position:
               
chr6:12091969-12091759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
7-210
               

               
Cow position:
               
chr6:4691951-4691736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
132, 96
               

               
Conread position:
               
7-211
               

               
Cow position:
               
chr6:60740038-60740239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
7-212
               

               
Cow position:
               
chr6:39093773-39093975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
25, 114
               

               
Conread position:
               
7-212
               

               
Cow position:
               
chr6:48379590-48379381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
7-215
               

               
Cow position:
               
chr6:19446277-19446486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
70, 51
               

               
Conread position:
               
7-215
               

               
Cow position:
               
chr6:21061857-21061658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
7-216
               

               
Cow position:
               
chr6:37692775-37692983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
151, 22
               

               
Conread position:
               
7-217
               

               
Cow position:
               
chr6:18144215-18144436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
7-217
               

               
Cow position:
               
chr6:24031403-24031598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
7-217
               

               
Cow position:
               
chr6:24781531-24781316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
138, 41
               

               
Conread position:
               
7-217
               

               
Cow position:
               
chr6:32268860-32268652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
128, 41
               

               
Conread position:
               
7-217
               

               
Cow position:
               
chr6:43787887-43787673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
7-217
               

               
Cow position:
               
chr6:60118174-60118377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
7-218
               

               
Cow position:
               
chr6:19401868-19402081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
45, 92
               

               
Conread position:
               
7-220
               

               
Cow position:
               
chr6:57079447-57079664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
7-221
               

               
Cow position:
               
chr6:10039747-10039965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
7-221
               

               
Cow position:
               
chr6:12669124-12669337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
135, 28
               

               
Conread position:
               
7-221
               

               
Cow position:
               
chr6:28089024-28088808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
136, 109
               

               
Conread position:
               
7-221
               

               
Cow position:
               
chr6:28156135-28155934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
7-221
               

               
Cow position:
               
chr6:57546197-57545990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
136, 33
               

               
Conread position:
               
7-222
               

               
Cow position:
               
chr6:37395377-37395161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
90, 140
               

               
Conread position:
               
7-222
               

               
Cow position:
               
chr6:56986624-56986408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
143, 44
               

               
Conread position:
               
7-224
               

               
Cow position:
               
chr6:16288034-16287825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
125, 62
               

               
Conread position:
               
7-224
               

               
Cow position:
               
chr6:66433974-66434196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 57
               

               
Conread position:
               
7-225
               

               
Cow position:
               
chr6:12928170-12928384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 44
               

               
Conread position:
               
7-225
               

               
Cow position:
               
chr6:32287662-32287874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
13, 78
               

               
Conread position:
               
7-225
               

               
Cow position:
               
chr6:33150268-33150051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
131, 94
               

               
Conread position:
               
7-225
               

               
Cow position:
               
chr6:35990212-35989995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
49, 138
               

               
Conread position:
               
7-225
               

               
Cow position:
               
chr6:37149213-37149425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
7-225
               

               
Cow position:
               
chr6:38771309-38771514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
7-226
               

               
Cow position:
               
chr6:24004560-24004763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
7-226
               

               
Cow position:
               
chr6:47958839-47959049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
7-226
               

               
Cow position:
               
chr6:54490709-54490502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
7-227
               

               
Cow position:
               
chr6:12623539-12623753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 73
               

               
Conread position:
               
7-227
               

               
Cow position:
               
chr6:15305595-15305817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 55
               

               
Conread position:
               
7-227
               

               
Cow position:
               
chr6:27239982-27239759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
7-227
               

               
Cow position:
               
chr6:35436018-35436232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
7-227
               

               
Cow position:
               
chr6:37246417-37246192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
135, 76
               

               
Conread position:
               
7-227
               

               
Cow position:
               
chr6:37827929-37827702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
35, 92
               

               
Conread position:
               
7-227
               

               
Cow position:
               
chr6:45596508-45596300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
120, 87
               

               
Conread position:
               
7-227
               

               
Cow position:
               
chr6:54127789-54127576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
7-228
               

               
Cow position:
               
chr6:6067678-6067467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
107, 134
               

               
Conread position:
               
7-228
               

               
Cow position:
               
chr6:10176278-10176051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
7-228
               

               
Cow position:
               
chr6:40032215-40032427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
210, 37
               

               
Conread position:
               
7-228
               

               
Cow position:
               
chr6:47884999-47884799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
7-228
               

               
Cow position:
               
chr6:54365304-54365084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
115, 99
               

               
Conread position:
               
7-229
               

               
Cow position:
               
chr6:143350-143130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 34
               

               
Conread position:
               
7-229
               

               
Cow position:
               
chr6:8966122-8966334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
7-229
               

               
Cow position:
               
chr6:10399881-10399661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
136, 34
               

               
Conread position:
               
7-230
               

               
Cow position:
               
chr6:21535061-21535288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
7-230
               

               
Cow position:
               
chr6:53841482-53841255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
7-231
               

               
Cow position:
               
chr6:8125350-8125579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
7-231
               

               
Cow position:
               
chr6:30123164-30122916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
35, 127
               

               
Conread position:
               
7-231
               

               
Cow position:
               
chr6:62669889-62670120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
7-231
               

               
Cow position:
               
chr6:67281919-67282131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
7-232
               

               
Cow position:
               
chr6:8600024-8600254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
125, 52
               

               
Conread position:
               
7-232
               

               
Cow position:
               
chr6:17313759-17313990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
131, 86
               

               
Conread position:
               
7-232
               

               
Cow position:
               
chr6:27888375-27888595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
210, 125
               

               
Conread position:
               
7-232
               

               
Cow position:
               
chr6:35319110-35318884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
93, 97
               

               
Conread position:
               
7-232
               

               
Cow position:
               
chr6:36809184-36808953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
19, 112
               

               
Conread position:
               
7-232
               

               
Cow position:
               
chr6:47305365-47305591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
126, 80
               

               
Conread position:
               
7-232
               

               
Cow position:
               
chr6:48435858-48436082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
135, 51
               

               
Conread position:
               
7-232
               

               
Cow position:
               
chr6:51530166-51529938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
18, 179
               

               
Conread position:
               
7-232
               

               
Cow position:
               
chr6:58370782-58370998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
211, 60
               

               
Conread position:
               
7-232
               

               
Cow position:
               
chr6:60144174-60143949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
7-232
               

               
Cow position:
               
chr6:62371153-62370936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
212, 52
               

               
Conread position:
               
7-232
               

               
Cow position:
               
chr6:63065850-63066087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
7-232
               

               
Cow position:
               
chr6:66590106-66590324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
178, 74
               

               
Conread position:
               
7-233
               

               
Cow position:
               
chr6:12338017-12338241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
83, 132
               

               
Conread position:
               
7-233
               

               
Cow position:
               
chr6:19996640-19996867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
130, 17
               

               
Conread position:
               
7-233
               

               
Cow position:
               
chr6:21475751-21475978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
147, 111
               

               
Conread position:
               
7-233
               

               
Cow position:
               
chr6:35171629-35171865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
112, 80
               

               
Conread position:
               
7-233
               

               
Cow position:
               
chr6:63251899-63251670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
135, 98
               

               
Conread position:
               
7-234
               

               
Cow position:
               
chr6:323281-323050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
122, 109
               

               
Conread position:
               
7-235
               

               
Cow position:
               
chr6:1429664-1429888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
209, 109
               

               
Conread position:
               
7-236
               

               
Cow position:
               
chr6:1703828-1704048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
134, 41
               

               
Conread position:
               
7-236
               

               
Cow position:
               
chr6:6060548-6060319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
126, 178
               

               
Conread position:
               
7-236
               

               
Cow position:
               
chr6:17997295-17997063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
140, 41
               

               
Conread position:
               
7-236
               

               
Cow position:
               
chr6:21715072-21715304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
7-236
               

               
Cow position:
               
chr6:23401968-23401741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
7-236
               

               
Cow position:
               
chr6:32453409-32453643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
128, 94
               

               
Conread position:
               
7-236
               

               
Cow position:
               
chr6:64431961-64432188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
52, 134
               

               
Conread position:
               
7-237
               

               
Cow position:
               
chr6:14949457-14949236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
67, 52
               

               
Conread position:
               
7-237
               

               
Cow position:
               
chr6:57405101-57404880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
86, 71
               

               
Conread position:
               
7-241
               

               
Cow position:
               
chr6:15242858-15243097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 229
               

               
Conread position:
               
7-241
               

               
Cow position:
               
chr6:16090927-16091157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 121
               

               
Conread position:
               
7-241
               

               
Cow position:
               
chr6:44078542-44078773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
151, 41
               

               
Conread position:
               
7-241
               

               
Cow position:
               
chr6:53145659-53145421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
122, 109
               

               
Conread position:
               
7-242
               

               
Cow position:
               
chr6:18080491-18080258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
122, 51
               

               
Conread position:
               
7-244
               

               
Cow position:
               
chr6:7119595-7119366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
232, 125
               

               
Conread position:
               
7-245
               

               
Cow position:
               
chr6:15300805-15300578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
7-250
               

               
Cow position:
               
chr6:42483439-42483683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
133, 46
               

               
Conread position:
               
7-250
               

               
Cow position:
               
chr6:55404930-55405182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
35, 29
               

               
Conread position:
               
7-251
               

               
Cow position:
               
chr6:21587406-21587164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
205, 80
               

               
Conread position:
               
7-252
               

               
Cow position:
               
chr6:14063285-14063020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
62, 238
               

               
Conread position:
               
7-256
               

               
Cow position:
               
chr6:1103715-1103475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
126, 95
               

               
Conread position:
               
7-258
               

               
Cow position:
               
chr6:50090666-50090922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
122, 109
               

               
Conread position:
               
7-261
               

               
Cow position:
               
chr6:26450338-26450580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
232, 50
               

               
Conread position:
               
7-262
               

               
Cow position:
               
chr6:48469024-48469293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
112, 197
               

               
Conread position:
               
7-265
               

               
Cow position:
               
chr6:1475369-1475622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
231, 125
               

               
Conread position:
               
7-277
               

               
Cow position:
               
chr6:33450946-33450677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
197, 48
               

               
Conread position:
               
7-307
               

               
Cow position:
               
chr6:7801368-7801078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
135, 21
               

               
Conread position:
               
8-126
               

               
Cow position:
               
chr6:20097934-20097816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-126
               

               
Cow position:
               
chr6:35613397-35613274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
8-126
               

               
Cow position:
               
chr6:60350267-60350149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-155
               

               
Cow position:
               
chr6:222427-222288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
8-155
               

               
Cow position:
               
chr6:8209579-8209432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
122, 18
               

               
Conread position:
               
8-155
               

               
Cow position:
               
chr6:46571131-46571278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
122, 16
               

               
Conread position:
               
8-183
               

               
Cow position:
               
chr6:21514583-21514405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
132, 163
               

               
Conread position:
               
8-193
               

               
Cow position:
               
chr6:67643666-67643478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
8-195
               

               
Cow position:
               
chr6:26915356-26915541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
126, 54
               

               
Conread position:
               
8-202
               

               
Cow position:
               
chr6:9718887-9718697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
8-207
               

               
Cow position:
               
chr6:5114024-5113822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
125, 40
               

               
Conread position:
               
8-207
               

               
Cow position:
               
chr6:51835425-51835623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
134, 29
               

               
Conread position:
               
8-207
               

               
Cow position:
               
chr6:68816193-68816395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
132, 13
               

               
Conread position:
               
8-209
               

               
Cow position:
               
chr6:37466115-37466304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
70, 108
               

               
Conread position:
               
8-209
               

               
Cow position:
               
chr6:61681102-61681305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
8-211
               

               
Cow position:
               
chr6:22525355-22525554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
8-219
               

               
Cow position:
               
chr6:41014954-41014737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
8-219
               

               
Cow position:
               
chr6:67950980-67951194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
131, 40
               

               
Conread position:
               
8-220
               

               
Cow position:
               
chr6:38609993-38610212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
8-220
               

               
Cow position:
               
chr6:44867518-44867309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
130, 161
               

               
Conread position:
               
8-220
               

               
Cow position:
               
chr6:58725395-58725605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
8-221
               

               
Cow position:
               
chr6:12964877-12965093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
114, 189
               

               
Conread position:
               
8-222
               

               
Cow position:
               
chr6:39414844-39415064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
31, 101
               

               
Conread position:
               
8-222
               

               
Cow position:
               
chr6:57320559-57320358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
132, 58
               

               
Conread position:
               
8-223
               

               
Cow position:
               
chr6:9736632-9736404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
17, 51
               

               
Conread position:
               
8-224
               

               
Cow position:
               
chr6:23025080-23024856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
8-224
               

               
Cow position:
               
chr6:32126081-32126294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
8-224
               

               
Cow position:
               
chr6:65871062-65871273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
8-226
               

               
Cow position:
               
chr6:8365836-8366060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
8-226
               

               
Cow position:
               
chr6:47245806-47246026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
113, 12
               

               
Conread position:
               
8-227
               

               
Cow position:
               
chr6:18904026-18903792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
106, 24
               

               
Conread position:
               
8-231
               

               
Cow position:
               
chr6:6965372-6965146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
126, 30
               

               
Conread position:
               
8-231
               

               
Cow position:
               
chr6:21456658-21456428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
74, 130
               

               
Conread position:
               
8-231
               

               
Cow position:
               
chr6:47355848-47356075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
130, 79
               

               
Conread position:
               
8-232
               

               
Cow position:
               
chr6:26155173-26155395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
200, 0
               

               
Conread position:
               
8-232
               

               
Cow position:
               
chr6:32121932-32122143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
8-232
               

               
Cow position:
               
chr6:35727868-35728099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
34, 114
               

               
Conread position:
               
8-232
               

               
Cow position:
               
chr6:42034797-42035020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 63
               

               
Conread position:
               
8-232
               

               
Cow position:
               
chr6:51581227-51581003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
126, 54
               

               
Conread position:
               
8-232
               

               
Cow position:
               
chr6:61631584-61631358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
96, 111
               

               
Conread position:
               
8-232
               

               
Cow position:
               
chr6:68376297-68376065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
17, 55
               

               
Conread position:
               
8-233
               

               
Cow position:
               
chr6:49421763-49421545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
119, 24
               

               
Conread position:
               
8-233
               

               
Cow position:
               
chr6:67574412-67574641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
19, 67
               

               
Conread position:
               
8-235
               

               
Cow position:
               
chr6:22850230-22849997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
130, 108
               

               
Conread position:
               
8-237
               

               
Cow position:
               
chr6:6168715-6168941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
83, 56
               

               
Conread position:
               
8-237
               

               
Cow position:
               
chr6:39358320-39358087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
28, 139
               

               
Conread position:
               
8-241
               

               
Cow position:
               
chr6:69334285-69334053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
71, 58
               

               
Conread position:
               
8-242
               

               
Cow position:
               
chr6:52478386-52478149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
8-243
               

               
Cow position:
               
chr6:12761304-12761543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 76
               

               
Conread position:
               
8-243
               

               
Cow position:
               
chr6:53138913-53138676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
26, 44
               

               
Conread position:
               
8-244
               

               
Cow position:
               
chr6:13687787-13687555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
227, 82
               

               
Conread position:
               
8-252
               

               
Cow position:
               
chr6:13565113-13565357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
144, 43
               

               
Conread position:
               
8-256
               

               
Cow position:
               
chr6:55417504-55417260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
22, 109
               

               
Conread position:
               
8-280
               

               
Cow position:
               
chr6:6063269-6062996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
121, 108
               

               
Conread position:
               
9-139
               

               
Cow position:
               
chr6:28977014-28976884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
9-198
               

               
Cow position:
               
chr6:36920948-36920759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
126, 41
               

               
Conread position:
               
9-198
               

               
Cow position:
               
chr6:62811576-62811766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
9-201
               

               
Cow position:
               
chr6:52412887-52413081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
115, 15
               

               
Conread position:
               
9-218
               

               
Cow position:
               
chr6:31806902-31806689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
9-219
               

               
Cow position:
               
chr6:61109813-61110019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
9-220
               

               
Cow position:
               
chr6:3952544-3952759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
9-221
               

               
Cow position:
               
chr6:20157359-20157574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
111, 99
               

               
Conread position:
               
9-221
               

               
Cow position:
               
chr6:55297069-55296853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
9-225
               

               
Cow position:
               
chr6:3330013-3330239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
33, 113
               

               
Conread position:
               
9-226
               

               
Cow position:
               
chr6:42567518-42567741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
9-226
               

               
Cow position:
               
chr6:54036116-54035894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
133, 16
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr6:94170-93952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
210, 102
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr6:4144667-4144889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
120, 99
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr6:5845145-5844921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr6:6724532-6724756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
118, 53
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr6:14056444-14056221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
84, 183
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr6:14914209-14913989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
22, 14
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr6:16746369-16746593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr6:21399730-21399507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
133, 173
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr6:34560978-34560751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
123, 36
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr6:43345416-43345193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr6:48282018-48282242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr6:50862968-50863194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr6:54208109-54207885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr6:54848954-54849178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr6:55209584-55209807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
132, 49
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr6:55376152-55375929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
133, 21
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr6:60783896-60784118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr6:64429170-64428947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
133, 68
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr6:67462930-67462706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr6:67728401-67728623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
9-228
               

               
Cow position:
               
chr6:51666311-51666087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
133, 46
               

               
Conread position:
               
9-230
               

               
Cow position:
               
chr6:17816970-17816744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 184
               

               
Conread position:
               
9-230
               

               
Cow position:
               
chr6:18447490-18447267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
134, 36
               

               
Conread position:
               
9-230
               

               
Cow position:
               
chr6:50269657-50269434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
133, 39
               

               
Conread position:
               
9-231
               

               
Cow position:
               
chr6:24339308-24339538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
9-232
               

               
Cow position:
               
chr6:4468795-4469018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
138, 11
               

               
Conread position:
               
9-232
               

               
Cow position:
               
chr6:19045648-19045880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
9-232
               

               
Cow position:
               
chr6:51539056-51538819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 109
               

               
Conread position:
               
9-232
               

               
Cow position:
               
chr6:67187710-67187930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
36, 8
               

               
Conread position:
               
9-233
               

               
Cow position:
               
chr6:42728671-42728899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
133, 103
               

               
Conread position:
               
9-233
               

               
Cow position:
               
chr6:55546149-55545919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
9-236
               

               
Cow position:
               
chr6:24536506-24536270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
113, 107
               

               
Conread position:
               
9-236
               

               
Cow position:
               
chr6:48988456-48988687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
123, 219
               

               
Conread position:
               
9-236
               

               
Cow position:
               
chr6:54846253-54846020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
9-236
               

               
Cow position:
               
chr6:59603182-59602961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
9-236
               

               
Cow position:
               
chr6:62929522-62929755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
133, 8
               

               
Conread position:
               
9-236
               

               
Cow position:
               
chr6:68644015-68644249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
9-238
               

               
Cow position:
               
chr6:36643466-36643232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
136, 62
               

               
Conread position:
               
9-242
               

               
Cow position:
               
chr6:8562748-8562972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
101, 57
               

               
Conread position:
               
9-243
               

               
Cow position:
               
chr6:47648210-47647969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
133, 99
               

               
Conread position:
               
9-250
               

               
Cow position:
               
chr6:58304440-58304680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
128, 177
               

               
Conread position:
               
9-263
               

               
Cow position:
               
chr6:47778901-47779163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
9-263
               

               
Cow position:
               
chr6:47782887-47783143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
111, 214
               

               
Conread position:
               
9-264
               

               
Cow position:
               
chr6:1090606-1090864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
133, 250
               

               
Conread position:
               
10-143
               

               
Cow position:
               
chr6:59069597-59069460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
10-149
               

               
Cow position:
               
chr6:61569659-61569796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
131, 47
               

               
Conread position:
               
10-150
               

               
Cow position:
               
chr6:582245-582106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
10-166
               

               
Cow position:
               
chr6:48112224-48112380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
120, 41
               

               
Conread position:
               
10-207
               

               
Cow position:
               
chr6:54132842-54133036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
134, 67
               

               
Conread position:
               
10-207
               

               
Cow position:
               
chr6:63047619-63047801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
10-217
               

               
Cow position:
               
chr6:38853632-38853421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
10-219
               

               
Cow position:
               
chr6:46173231-46173021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
132, 31
               

               
Conread position:
               
10-221
               

               
Cow position:
               
chr6:7128376-7128165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
138, 108
               

               
Conread position:
               
10-221
               

               
Cow position:
               
chr6:55054063-55054278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
10-223
               

               
Cow position:
               
chr6:61884140-61883932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
128, 63
               

               
Conread position:
               
10-225
               

               
Cow position:
               
chr6:8094262-8094043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
56, 60
               

               
Conread position:
               
10-225
               

               
Cow position:
               
chr6:50883651-50883436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
29, 125
               

               
Conread position:
               
10-226
               

               
Cow position:
               
chr6:46558084-46558298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
10-227
               

               
Cow position:
               
chr6:55548507-55548287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
140, 160
               

               
Conread position:
               
10-229
               

               
Cow position:
               
chr6:37463049-37463252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
10-231
               

               
Cow position:
               
chr6:28148281-28148513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 95
               

               
Conread position:
               
10-232
               

               
Cow position:
               
chr6:5330439-5330664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
132, 106
               

               
Conread position:
               
10-232
               

               
Cow position:
               
chr6:8688820-8688600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
10-232
               

               
Cow position:
               
chr6:21004701-21004930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
14, 34
               

               
Conread position:
               
10-236
               

               
Cow position:
               
chr6:21293469-21293244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 79
               

               
Conread position:
               
10-236
               

               
Cow position:
               
chr6:50771332-50771106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
131, 36
               

               
Conread position:
               
10-236
               

               
Cow position:
               
chr6:62437441-62437670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
132, 218
               

               
Conread position:
               
10-242
               

               
Cow position:
               
chr6:8637305-8637527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
35, 113
               

               
Conread position:
               
10-243
               

               
Cow position:
               
chr6:38640260-38640495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
135, 181
               

               
Conread position:
               
10-252
               

               
Cow position:
               
chr6:62078949-62079190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
207, 133
               

               
Conread position:
               
10-259
               

               
Cow position:
               
chr6:19292828-19293077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
146, 110
               

               
Conread position:
               
11-155
               

               
Cow position:
               
chr6:60451455-60451598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
11-187
               

               
Cow position:
               
chr6:21467236-21467060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
131, 37
               

               
Conread position:
               
11-215
               

               
Cow position:
               
chr6:17794736-17794522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
11-216
               

               
Cow position:
               
chr6:34196123-34195928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
18, 61
               

               
Conread position:
               
11-217
               

               
Cow position:
               
chr6:38207462-38207250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
133, 115
               

               
Conread position:
               
11-218
               

               
Cow position:
               
chr6:57089226-57089440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
11-219
               

               
Cow position:
               
chr6:60266155-60265931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
11-221
               

               
Cow position:
               
chr6:45690582-45690380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
11-223
               

               
Cow position:
               
chr6:21235070-21235288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
42, 178
               

               
Conread position:
               
11-224
               

               
Cow position:
               
chr6:16103168-16102949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
135, 48
               

               
Conread position:
               
11-224
               

               
Cow position:
               
chr6:51933582-51933781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
11-225
               

               
Cow position:
               
chr6:13367313-13367527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
208, 134
               

               
Conread position:
               
11-227
               

               
Cow position:
               
chr6:1770170-1769947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
109, 97
               

               
Conread position:
               
11-227
               

               
Cow position:
               
chr6:5095517-5095295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
10, 186
               

               
Conread position:
               
11-227
               

               
Cow position:
               
chr6:19755054-19754834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
15, 106
               

               
Conread position:
               
11-227
               

               
Cow position:
               
chr6:61113796-61114010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
29, 12
               

               
Conread position:
               
11-228
               

               
Cow position:
               
chr6:66947790-66947572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
189, 37
               

               
Conread position:
               
11-230
               

               
Cow position:
               
chr6:611579-611791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
55, 9
               

               
Conread position:
               
11-232
               

               
Cow position:
               
chr6:15447170-15446945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
146, 210
               

               
Conread position:
               
11-232
               

               
Cow position:
               
chr6:38441203-38441430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
139, 26
               

               
Conread position:
               
11-236
               

               
Cow position:
               
chr6:16380572-16380803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr6:11246794-11247050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
70, 16
               

               
Conread position:
               
12-131
               

               
Cow position:
               
chr6:8788008-8787889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
12-207
               

               
Cow position:
               
chr6:16261805-16262006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
10, 98
               

               
Conread position:
               
12-207
               

               
Cow position:
               
chr6:65535142-65534943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
12-217
               

               
Cow position:
               
chr6:42118731-42118927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
12-228
               

               
Cow position:
               
chr6:66259758-66259985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
12-229
               

               
Cow position:
               
chr6:40878806-40879036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
52, 181
               

               
Conread position:
               
12-229
               

               
Cow position:
               
chr6:46282975-46282743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
152, 135
               

               
Conread position:
               
12-236
               

               
Cow position:
               
chr6:36196239-36196454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
98, 117
               

               
Conread position:
               
12-237
               

               
Cow position:
               
chr6:33509818-33510047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
131, 46
               

               
Conread position:
               
12-252
               

               
Cow position:
               
chr6:23353580-23353824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
87, 29
               

               
Conread position:
               
13-150
               

               
Cow position:
               
chr6:54349724-54349862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
115, 49
               

               
Conread position:
               
13-152
               

               
Cow position:
               
chr6:21066854-21066714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
13-205
               

               
Cow position:
               
chr6:19695839-19696032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
129, 35
               

               
Conread position:
               
13-227
               

               
Cow position:
               
chr6:66363205-66362987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
14-147
               

               
Cow position:
               
chr6:60516656-60516786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
14-321
               

               
Cow position:
               
chr6:23938091-23938388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
250, 124
               

               
Conread position:
               
15-220
               

               
Cow position:
               
chr6:34475529-34475320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
15-246
               

               
Cow position:
               
chr6:8369456-8369687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
15-250
               

               
Cow position:
               
chr6:10612878-10613097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
16-217
               

               
Cow position:
               
chr6:65903591-65903391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
149, 89
               

               
Conread position:
               
16-227
               

               
Cow position:
               
chr6:22985822-22985617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
92, 125
               

               
Conread position:
               
16-228
               

               
Cow position:
               
chr6:22876898-22876680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
16-229
               

               
Cow position:
               
chr6:53024771-53024564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
16-232
               

               
Cow position:
               
chr6:21184190-21183971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
133, 77
               

               
Conread position:
               
16-237
               

               
Cow position:
               
chr6:7190086-7189875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
201, 114
               

               
Conread position:
               
16-238
               

               
Cow position:
               
chr6:34569440-34569673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
134, 105
               

               
Conread position:
               
16-251
               

               
Cow position:
               
chr6:5601735-5601973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
120, 46
               

               
Conread position:
               
17-183
               

               
Cow position:
               
chr6:16352320-16352162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
17-224
               

               
Cow position:
               
chr6:3936818-3937029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 33
               

               
Conread position:
               
17-274
               

               
Cow position:
               
chr6:35181223-35180963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
125, 238
               

               
Conread position:
               
18-227
               

               
Cow position:
               
chr6:8468700-8468906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
196, 167
               

               
Conread position:
               
18-227
               

               
Cow position:
               
chr6:30825731-30825531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
203, 44
               

               
Conread position:
               
19-230
               

               
Cow position:
               
chr6:69145395-69145591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
81, 34
               

               
Conread position:
               
19-253
               

               
Cow position:
               
chr6:43906648-43906403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
20-231
               

               
Cow position:
               
chr6:48803596-48803391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
56, 42
               

               
Conread position:
               
20-259
               

               
Cow position:
               
chr6:47150853-47151096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
17, 219
               

               
Conread position:
               
21-220
               

               
Cow position:
               
chr6:36537323-36537125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
22-232
               

               
Cow position:
               
chr6:10605680-10605897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 84
               

               
Conread position:
               
22-237
               

               
Cow position:
               
chr6:20075832-20076053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
59, 95
               

               
Conread position:
               
23-227
               

               
Cow position:
               
chr6:27636355-27636561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
104, 8
               

               
Conread position:
               
24-160
               

               
Cow position:
               
chr6:35654509-35654373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
24-230
               

               
Cow position:
               
chr6:58173385-58173590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
17, 111
               

               
Conread position:
               
24-232
               

               
Cow position:
               
chr6:41657308-41657516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
195, 125
               

               
Conread position:
               
24-262
               

               
Cow position:
               
chr6:55044601-55044360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
119, 92
               

               
Conread position:
               
25-152
               

               
Cow position:
               
chr6:28900368-28900495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
25-205
               

               
Cow position:
               
chr6:10189818-10189985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
25-205
               

               
Cow position:
               
chr6:15058418-15058598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
135, 120
               

               
Conread position:
               
25-207
               

               
Cow position:
               
chr6:14471405-14471590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
109, 18
               

               
Conread position:
               
25-207
               

               
Cow position:
               
chr6:40682621-40682443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
25-226
               

               
Cow position:
               
chr6:21350991-21350787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
119, 62
               

               
Conread position:
               
25-231
               

               
Cow position:
               
chr6:24514504-24514286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
45, 211
               

               
Conread position:
               
25-232
               

               
Cow position:
               
chr6:35726136-35726339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
93, 109
               

               
Conread position:
               
25-232
               

               
Cow position:
               
chr6:45921172-45920969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
100, 93
               

               
Conread position:
               
25-233
               

               
Cow position:
               
chr6:41226788-41226596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
25-234
               

               
Cow position:
               
chr6:24491070-24491286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
42, 177
               

               
Conread position:
               
25-236
               

               
Cow position:
               
chr6:53711444-53711656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
112, 195
               

               
Conread position:
               
25-242
               

               
Cow position:
               
chr6:30895951-30895732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
10, 108
               

               
Conread position:
               
25-252
               

               
Cow position:
               
chr6:8315424-8315660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
26-219
               

               
Cow position:
               
chr6:21083498-21083304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
26-220
               

               
Cow position:
               
chr6:25773173-25772981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
121, 34
               

               
Conread position:
               
26-225
               

               
Cow position:
               
chr6:66978912-66979114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
117, 38
               

               
Conread position:
               
27-221
               

               
Cow position:
               
chr6:69374789-69374595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
72, 111
               

               
Conread position:
               
27-231
               

               
Cow position:
               
chr6:15974478-15974275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
117, 25
               

               
Conread position:
               
28-195
               

               
Cow position:
               
chr6:47698650-47698816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
107, 30
               

               
Conread position:
               
28-221
               

               
Cow position:
               
chr6:19563439-19563240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
28-221
               

               
Cow position:
               
chr6:36225153-36225349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
28-225
               

               
Cow position:
               
chr6:56850068-56850260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
28-227
               

               
Cow position:
               
chr6:53792424-53792233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
107, 100
               

               
Conread position:
               
28-228
               

               
Cow position:
               
chr6:61515145-61514950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
9, 61
               

               
Conread position:
               
28-230
               

               
Cow position:
               
chr6:53346019-53346214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
28-232
               

               
Cow position:
               
chr6:22215425-22215213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
94, 20
               

               
Conread position:
               
28-232
               

               
Cow position:
               
chr6:30983564-30983767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
110, 84
               

               
Conread position:
               
28-234
               

               
Cow position:
               
chr6:13742033-13742239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
109, 59
               

               
Conread position:
               
28-236
               

               
Cow position:
               
chr6:6996853-6996641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
114, 12
               

               
Conread position:
               
28-265
               

               
Cow position:
               
chr6:60777814-60778052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
7, 13
               

               
Conread position:
               
29-155
               

               
Cow position:
               
chr6:47676060-47676184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
29-220
               

               
Cow position:
               
chr6:8187144-8186949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
38, 46
               

               
Conread position:
               
29-227
               

               
Cow position:
               
chr6:11867234-11867030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
29-227
               

               
Cow position:
               
chr6:49173512-49173304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
29-227
               

               
Cow position:
               
chr6:62724601-62724805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
96, 87
               

               
Conread position:
               
29-235
               

               
Cow position:
               
chr6:23058257-23058464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
114, 194
               

               
Conread position:
               
30-225
               

               
Cow position:
               
chr6:55646905-55646706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 164
               

               
Conread position:
               
30-227
               

               
Cow position:
               
chr6:44540855-44541049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
30-228
               

               
Cow position:
               
chr6:44544101-44543901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
107, 7
               

               
Conread position:
               
30-231
               

               
Cow position:
               
chr6:35743024-35743227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
10, 138
               

               
Conread position:
               
31-221
               

               
Cow position:
               
chr6:33206784-33206968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
31-227
               

               
Cow position:
               
chr6:55517923-55518123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
31-244
               

               
Cow position:
               
chr6:411166-410956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
173, 20
               

               
Conread position:
               
32-221
               

               
Cow position:
               
chr6:15266304-15266128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
32-226
               

               
Cow position:
               
chr6:63168715-63168519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
104, 24
               

               
Conread position:
               
32-267
               

               
Cow position:
               
chr6:31471123-31471368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
13, 77
               

               
Conread position:
               
33-222
               

               
Cow position:
               
chr6:35985087-35984894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
33-222
               

               
Cow position:
               
chr6:60186613-60186411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
34-156
               

               
Cow position:
               
chr6:49607443-49607565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
34-176
               

               
Cow position:
               
chr6:58076444-58076590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
34-207
               

               
Cow position:
               
chr6:61644808-61644631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
34-219
               

               
Cow position:
               
chr6:34722054-34721874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
154, 63
               

               
Conread position:
               
34-221
               

               
Cow position:
               
chr6:26054854-26054661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
34-233
               

               
Cow position:
               
chr6:16411665-16411866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
108, 14
               

               
Conread position:
               
34-242
               

               
Cow position:
               
chr6:45160007-45159793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
35-205
               

               
Cow position:
               
chr6:48792829-48793003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
35-207
               

               
Cow position:
               
chr6:24905679-24905847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
35-223
               

               
Cow position:
               
chr6:15172617-15172797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 96
               

               
Conread position:
               
35-227
               

               
Cow position:
               
chr6:68272651-68272848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
35-233
               

               
Cow position:
               
chr6:14383727-14383929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
106, 68
               

               
Conread position:
               
35-238
               

               
Cow position:
               
chr6:62805694-62805901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
94, 81
               

               
Conread position:
               
36-207
               

               
Cow position:
               
chr6:34380762-34380591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
124, 53
               

               
Conread position:
               
36-219
               

               
Cow position:
               
chr6:38032910-38033095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
27, 11
               

               
Conread position:
               
36-232
               

               
Cow position:
               
chr6:33960597-33960397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
89, 76
               

               
Conread position:
               
36-232
               

               
Cow position:
               
chr6:44566477-44566677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
107, 80
               

               
Conread position:
               
36-236
               

               
Cow position:
               
chr6:18776303-18776502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
93, 61
               

               
Conread position:
               
36-244
               

               
Cow position:
               
chr6:45980134-45979919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 65
               

               
Conread position:
               
37-224
               

               
Cow position:
               
chr6:48278839-48278653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
25, 120
               

               
Conread position:
               
38-228
               

               
Cow position:
               
chr6:58697577-58697383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
38-243
               

               
Cow position:
               
chr6:6614677-6614886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
76, 10
               

               
Conread position:
               
39-224
               

               
Cow position:
               
chr6:57467652-57467841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
39-241
               

               
Cow position:
               
chr6:19936514-19936309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
101, 77
               

               
Conread position:
               
41-155
               

               
Cow position:
               
chr6:14896976-14896864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
41-224
               

               
Cow position:
               
chr6:12631559-12631736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
177, 21
               

               
Conread position:
               
41-227
               

               
Cow position:
               
chr6:14263833-14263642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
31, 56
               

               
Conread position:
               
41-227
               

               
Cow position:
               
chr6:15587537-15587345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
41-227
               

               
Cow position:
               
chr6:18440420-18440233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
101, 153
               

               
Conread position:
               
41-227
               

               
Cow position:
               
chr6:32006397-32006211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
41-227
               

               
Cow position:
               
chr6:49685876-49686065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
102, 18
               

               
Conread position:
               
41-227
               

               
Cow position:
               
chr6:54679585-54679777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
41-227
               

               
Cow position:
               
chr6:56061718-56061910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
41-231
               

               
Cow position:
               
chr6:33302452-33302647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
41-231
               

               
Cow position:
               
chr6:36938925-36939123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
41-232
               

               
Cow position:
               
chr6:28562111-28561917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
99, 80
               

               
Conread position:
               
41-232
               

               
Cow position:
               
chr6:59297110-59297295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
41-232
               

               
Cow position:
               
chr6:66293542-66293735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
101, 146
               

               
Conread position:
               
41-235
               

               
Cow position:
               
chr6:34076219-34076415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
50, 107
               

               
Conread position:
               
41-268
               

               
Cow position:
               
chr6:21052392-21052160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
96, 194
               

               
Conread position:
               
42-237
               

               
Cow position:
               
chr6:36570518-36570719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
98, 188
               

               
Conread position:
               
42-247
               

               
Cow position:
               
chr6:17404619-17404828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
100, 51
               

               
Conread position:
               
43-220
               

               
Cow position:
               
chr6:54820891-54821072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
43-225
               

               
Cow position:
               
chr6:29210555-29210720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
43-254
               

               
Cow position:
               
chr6:26408445-26408233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
108, 203
               

               
Conread position:
               
44-221
               

               
Cow position:
               
chr6:34423398-34423221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
44-221
               

               
Cow position:
               
chr6:67543997-67543816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
44-231
               

               
Cow position:
               
chr6:53811643-53811835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
44-236
               

               
Cow position:
               
chr6:7130819-7130606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
44-238
               

               
Cow position:
               
chr6:35342121-35341931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
14, 69
               

               
Conread position:
               
45-207
               

               
Cow position:
               
chr6:47022622-47022784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
79, 71
               

               
Conread position:
               
45-242
               

               
Cow position:
               
chr6:68246772-68246572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
82, 71
               

               
Conread position:
               
47-227
               

               
Cow position:
               
chr6:16387645-16387457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
48-183
               

               
Cow position:
               
chr6:55449998-55450135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
48-236
               

               
Cow position:
               
chr6:50577585-50577770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
179, 93
               

               
Conread position:
               
48-241
               

               
Cow position:
               
chr6:37994273-37994462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
20, 86
               

               
Conread position:
               
48-246
               

               
Cow position:
               
chr6:43607189-43606977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
49-221
               

               
Cow position:
               
chr6:31847175-31847005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
49-231
               

               
Cow position:
               
chr6:34463522-34463341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
159, 96
               

               
Conread position:
               
50-230
               

               
Cow position:
               
chr6:154536-154720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
78, 147
               

               
Conread position:
               
51-230
               

               
Cow position:
               
chr6:43540182-43540014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
52-238
               

               
Cow position:
               
chr6:5600792-5600609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
146, 88
               

               
Conread position:
               
52-245
               

               
Cow position:
               
chr6:14150311-14150116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
87, 135
               

               
Conread position:
               
53-213
               

               
Cow position:
               
chr6:63182358-63182516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
53-236
               

               
Cow position:
               
chr6:31928705-31928895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
53-237
               

               
Cow position:
               
chr6:17412497-17412315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
168, 88
               

               
Conread position:
               
53-240
               

               
Cow position:
               
chr6:10225586-10225392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
92, 78
               

               
Conread position:
               
53-265
               

               
Cow position:
               
chr6:27219236-27219451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
11, 194
               

               
Conread position:
               
54-230
               

               
Cow position:
               
chr6:24903507-24903327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
54-231
               

               
Cow position:
               
chr6:4323400-4323571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
55-227
               

               
Cow position:
               
chr6:37129863-37129689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
86, 143
               

               
Conread position:
               
55-229
               

               
Cow position:
               
chr6:36891723-36891893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
89, 133
               

               
Conread position:
               
55-236
               

               
Cow position:
               
chr6:54406727-54406551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
55-237
               

               
Cow position:
               
chr6:66302534-66302350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
123, 86
               

               
Conread position:
               
56-232
               

               
Cow position:
               
chr6:4699780-4699955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
57-215
               

               
Cow position:
               
chr6:8726751-8726910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
57-247
               

               
Cow position:
               
chr6:7291389-7291574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
58-213
               

               
Cow position:
               
chr6:2014203-2014357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
153, 38
               

               
Conread position:
               
58-222
               

               
Cow position:
               
chr6:5445742-5445908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
79, 14
               

               
Conread position:
               
58-231
               

               
Cow position:
               
chr6:28559612-28559790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
58-236
               

               
Cow position:
               
chr6:31713550-31713733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
25, 32
               

               
Conread position:
               
59-236
               

               
Cow position:
               
chr6:16137695-16137512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
59-291
               

               
Cow position:
               
chr6:38020749-38020986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
112, 169
               

               
Conread position:
               
59-372
               

               
Cow position:
               
chr6:53732057-53732375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
66, 59
               

               
Conread position:
               
60-207
               

               
Cow position:
               
chr6:2757861-2758007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
61-232
               

               
Cow position:
               
chr6:54840430-54840248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
62-221
               

               
Cow position:
               
chr6:19225305-19225153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
62-228
               

               
Cow position:
               
chr6:29851447-29851616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
62-230
               

               
Cow position:
               
chr6:16627813-16627977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
62-235
               

               
Cow position:
               
chr6:21175416-21175589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
156, 81
               

               
Conread position:
               
62-236
               

               
Cow position:
               
chr6:14152812-14152634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
99, 133
               

               
Conread position:
               
66-236
               

               
Cow position:
               
chr6:49825013-49824834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
15, 52
               

               
Conread position:
               
67-231
               

               
Cow position:
               
chr6:59687729-59687561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
67, 49
               

               
Conread position:
               
68-231
               

               
Cow position:
               
chr6:12099602-12099441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
69-221
               

               
Cow position:
               
chr6:47673061-47672913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
118, 5
               

               
Conread position:
               
69-228
               

               
Cow position:
               
chr6:40833929-40833774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
56, 47
               

               
Conread position:
               
69-229
               

               
Cow position:
               
chr6:1945041-1945205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
69-233
               

               
Cow position:
               
chr6:59101236-59101071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
53, 43
               

               
Conread position:
               
70-199
               

               
Cow position:
               
chr6:53235566-53235436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
70-241
               

               
Cow position:
               
chr6:6547421-6547257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
71-222
               

               
Cow position:
               
chr6:26764740-26764582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
71-321
               

               
Cow position:
               
chr6:50445030-50444783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
71, 172
               

               
Conread position:
               
72-221
               

               
Cow position:
               
chr6:57935484-57935337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
68, 15
               

               
Conread position:
               
72-241
               

               
Cow position:
               
chr6:54828234-54828060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
73-234
               

               
Cow position:
               
chr6:16016123-16016289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
68, 45
               

               
Conread position:
               
74-221
               

               
Cow position:
               
chr6:47989516-47989665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
98, 77
               

               
Conread position:
               
74-222
               

               
Cow position:
               
chr6:21347060-21346913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
75-227
               

               
Cow position:
               
chr6:19025360-19025511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 56
               

               
Conread position:
               
75-227
               

               
Cow position:
               
chr6:66058616-66058464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
77-217
               

               
Cow position:
               
chr6:6117551-6117413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
78-228
               

               
Cow position:
               
chr6:23381574-23381418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
79-227
               

               
Cow position:
               
chr6:59759266-59759415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
81-209
               

               
Cow position:
               
chr6:79033-78907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
81-317
               

               
Cow position:
               
chr6:43770801-43770572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
139, 52
               

               
Conread position:
               
82-207
               

               
Cow position:
               
chr6:68602342-68602467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
82-259
               

               
Cow position:
               
chr6:30688413-30688235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
75, 134
               

               
Conread position:
               
83-220
               

               
Cow position:
               
chr6:11262846-11262979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
83-232
               

               
Cow position:
               
chr6:62849025-62849171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
84-241
               

               
Cow position:
               
chr6:60088376-60088214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
73, 53
               

               
Conread position:
               
86-241
               

               
Cow position:
               
chr6:15256919-15256762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
89-234
               

               
Cow position:
               
chr6:45633886-45633742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
122, 18
               

               
Conread position:
               
90-232
               

               
Cow position:
               
chr6:30881221-30881075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
31, 13
               

               
Conread position:
               
91-226
               

               
Cow position:
               
chr6:23235294-23235429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 15
               

               
Conread position:
               
92-221
               

               
Cow position:
               
chr6:65831469-65831602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
7, 12
               

               
Conread position:
               
92-232
               

               
Cow position:
               
chr6:129923-129782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
14, 84
               

               
Conread position:
               
93-235
               

               
Cow position:
               
chr6:36846506-36846366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
96-233
               

               
Cow position:
               
chr6:63762468-63762330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
36, 129
               

               
Conread position:
               
96-243
               

               
Cow position:
               
chr6:67810872-67810727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
26, 20
               

               
Conread position:
               
100-217
               

               
Cow position:
               
chr6:60673951-60674066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
102-232
               

               
Cow position:
               
chr6:12711670-12711541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 26
               

               
Conread position:
               
103-233
               

               
Cow position:
               
chr6:48661253-48661124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
86, 42
               

               
Conread position:
               
105-216
               

               
Cow position:
               
chr6:5371399-5371508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
106-232
               

               
Cow position:
               
chr6:24045237-24045107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
107-229
               

               
Cow position:
               
chr6:51019273-51019398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 5
               

               
Conread position:
               
108-236
               

               
Cow position:
               
chr6:456827-456696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 91
               

               
Conread position:
               
113-237
               

               
Cow position:
               
chr6:9452595-9452473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
114-228
               

               
Cow position:
               
chr6:38615257-38615373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
117-222
               

               
Cow position:
               
chr6:26556750-26556851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
120-232
               

               
Cow position:
               
chr6:16738749-16738866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
123-228
               

               
Cow position:
               
chr6:31695385-31695488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
124-223
               

               
Cow position:
               
chr6:36592305-36592404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
130-241
               

               
Cow position:
               
chr6:67615018-67614909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
132-237
               

               
Cow position:
               
chr6:899170-899067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
137-231
               

               
Cow position:
               
chr6:63233672-63233765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
137-232
               

               
Cow position:
               
chr6:36618844-36618939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
139-226
               

               
Cow position:
               
chr6:58210950-58210863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
139-232
               

               
Cow position:
               
chr6:29291731-29291824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
139-232
               

               
Cow position:
               
chr6:54990514-54990424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
139-236
               

               
Cow position:
               
chr6:61544229-61544131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 86
               

               
Conread position:
               
140-238
               

               
Cow position:
               
chr6:54285480-54285579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
143-227
               

               
Cow position:
               
chr6:68343898-68343983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
86
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
145-236
               

               
Cow position:
               
chr6:51842144-51842054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
92
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               
Show alignments to all cow chromosomes.