Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig4-TMW8058J07.5
        

               Conread position:
               284-728
               

               Cow position:
               chr11:38874199-38874630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               300
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               197, 16
               

               Conread position:
               308-684
               

               Cow position:
               chr11:71492659-71493041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 147
               

               Conread position:
               308-754
               

               Cow position:
               chr11:30355254-30354812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               310
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               29, 87
               

               Conread position:
               309-743
               

               Cow position:
               chr11:11125869-11125420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 129
               

               Conread position:
               312-710
               

               Cow position:
               chr11:11558368-11557958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               265
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               39, 145
               

               Conread position:
               313-611
               

               Cow position:
               chr11:249306-249595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               58, 100
               

               Conread position:
               315-590
               

               Cow position:
               chr11:35536772-35536497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               209
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               87, 43
               

               Conread position:
               315-747
               

               Cow position:
               chr11:30192375-30191922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 141
               

               Conread position:
               316-542
               

               Cow position:
               chr11:35669771-35669998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               180
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               78, 18
               

               Conread position:
               316-756
               

               Cow position:
               chr11:15632364-15632816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               301
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               55, 67
               

               Conread position:
               316-778
               

               Cow position:
               chr11:41272313-41271858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 16
               

               Conread position:
               317-538
               

               Cow position:
               chr11:897859-897630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               38, 76
               

               Conread position:
               317-624
               

               Cow position:
               chr11:21136989-21136688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               45, 65
               

               Conread position:
               317-744
               

               Cow position:
               chr11:17227455-17227884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 134
               

               Conread position:
               318-747
               

               Cow position:
               chr11:34113450-34113027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 43
               

               Conread position:
               318-747
               

               Cow position:
               chr11:49153134-49152706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 78
               

               Conread position:
               318-754
               

               Cow position:
               chr11:16342054-16342496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               310
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               170, 50
               

               Conread position:
               319-600
               

               Cow position:
               chr11:35212977-35213267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               208
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               15, 135
               

               Conread position:
               319-607
               

               Cow position:
               chr11:18785703-18785979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               76, 48
               

               Conread position:
               319-644
               

               Cow position:
               chr11:49057576-49057259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 76
               

               Conread position:
               319-774
               

               Cow position:
               chr11:10095536-10095067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 120
               

               Conread position:
               319-775
               

               Cow position:
               chr11:12111282-12111744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 49
               

               Conread position:
               320-466
               

               Cow position:
               chr11:2310259-2310110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               39, 76
               

               Conread position:
               320-467
               

               Cow position:
               chr11:75388186-75388341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               119
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               37, 14
               

               Conread position:
               320-479
               

               Cow position:
               chr11:48900667-48900823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               116
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               320-487
               

               Cow position:
               chr11:19578126-19577956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               131
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               74, 38
               

               Conread position:
               320-495
               

               Cow position:
               chr11:46499183-46499019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               320-498
               

               Cow position:
               chr11:15591288-15591470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               43, 132
               

               Conread position:
               320-510
               

               Cow position:
               chr11:45671184-45671386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               12, 91
               

               Conread position:
               320-526
               

               Cow position:
               chr11:63382005-63382222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               150
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               38, 126
               

               Conread position:
               320-538
               

               Cow position:
               chr11:77013963-77013741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               160
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               17, 95
               

               Conread position:
               320-539
               

               Cow position:
               chr11:80616407-80616199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               320-544
               

               Cow position:
               chr11:30172494-30172260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               9, 133
               

               Conread position:
               320-546
               

               Cow position:
               chr11:27461919-27462147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               43, 99
               

               Conread position:
               320-562
               

               Cow position:
               chr11:9699061-9699312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               150
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               16, 78
               

               Conread position:
               320-583
               

               Cow position:
               chr11:72871091-72870817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               188
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               9, 125
               

               Conread position:
               320-608
               

               Cow position:
               chr11:6194581-6194300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 96
               

               Conread position:
               320-626
               

               Cow position:
               chr11:13940381-13940066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               9, 67
               

               Conread position:
               320-628
               

               Cow position:
               chr11:47837513-47837186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               250
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               16, 138
               

               Conread position:
               320-633
               

               Cow position:
               chr11:67614733-67615061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               42, 133
               

               Conread position:
               320-636
               

               Cow position:
               chr11:43360595-43360919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 132
               

               Conread position:
               320-655
               

               Cow position:
               chr11:17493664-17493324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               7, 112
               

               Conread position:
               320-670
               

               Cow position:
               chr11:75874579-75874921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               9, 99
               

               Conread position:
               320-678
               

               Cow position:
               chr11:69402078-69402427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               15, 51
               

               Conread position:
               320-689
               

               Cow position:
               chr11:34646787-34646403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               274
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               49, 142
               

               Conread position:
               320-689
               

               Cow position:
               chr11:70600635-70601009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               269
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               43, 121
               

               Conread position:
               320-704
               

               Cow position:
               chr11:65607497-65607893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 140
               

               Conread position:
               320-722
               

               Cow position:
               chr11:14470553-14470144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 131
               

               Conread position:
               320-724
               

               Cow position:
               chr11:64044409-64044014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               261
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               51, 93
               

               Conread position:
               320-732
               

               Cow position:
               chr11:33348006-33348417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 110
               

               Conread position:
               320-733
               

               Cow position:
               chr11:36112601-36112184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 38
               

               Conread position:
               320-735
               

               Cow position:
               chr11:4662870-4663274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 39
               

               Conread position:
               320-737
               

               Cow position:
               chr11:27404879-27405306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               300
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               50, 140
               

               Conread position:
               320-737
               

               Cow position:
               chr11:62239933-62239512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               287
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               43, 135
               

               Conread position:
               320-742
               

               Cow position:
               chr11:56821070-56821499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               304
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               43, 63
               

               Conread position:
               320-743
               

               Cow position:
               chr11:20238867-20238429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 14
               

               Conread position:
               320-747
               

               Cow position:
               chr11:2084338-2083900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 139
               

               Conread position:
               320-747
               

               Cow position:
               chr11:13500201-13499767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 14
               

               Conread position:
               320-747
               

               Cow position:
               chr11:18484007-18484407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 74
               

               Conread position:
               320-747
               

               Cow position:
               chr11:32438780-32439196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               297
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               52, 62
               

               Conread position:
               320-747
               

               Cow position:
               chr11:44636588-44637008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 47
               

               Conread position:
               320-747
               

               Cow position:
               chr11:45631588-45632012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 68
               

               Conread position:
               320-747
               

               Cow position:
               chr11:67931300-67931742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               296
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               43, 20
               

               Conread position:
               320-748
               

               Cow position:
               chr11:30638758-30639197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               308
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               13, 138
               

               Conread position:
               320-753
               

               Cow position:
               chr11:37804361-37804807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               301
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               48, 14
               

               Conread position:
               320-754
               

               Cow position:
               chr11:59619594-59620015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               286
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               15, 52
               

               Conread position:
               320-760
               

               Cow position:
               chr11:42083645-42083219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 47
               

               Conread position:
               320-762
               

               Cow position:
               chr11:41361-40919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               308
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               43, 14
               

               Conread position:
               320-764
               

               Cow position:
               chr11:1485668-1486129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               306
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               43, 137
               

               Conread position:
               320-764
               

               Cow position:
               chr11:62573836-62574263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               285
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               115, 41
               

               Conread position:
               320-773
               

               Cow position:
               chr11:30165703-30165233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               312
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               41, 119
               

               Conread position:
               320-778
               

               Cow position:
               chr11:36182882-36182408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               314
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               51, 14
               

               Conread position:
               320-788
               

               Cow position:
               chr11:62019413-62019889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               313
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               75, 47
               

               Conread position:
               320-808
               

               Cow position:
               chr11:40459298-40458811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               334
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               14, 130
               

               Conread position:
               321-540
               

               Cow position:
               chr11:28078680-28078458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               42, 131
               

               Conread position:
               321-590
               

               Cow position:
               chr11:19946612-19946345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               210
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               32, 40
               

               Conread position:
               321-590
               

               Cow position:
               chr11:41603510-41603780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               170, 46
               

               Conread position:
               321-624
               

               Cow position:
               chr11:7385626-7385306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               223
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               13, 123
               

               Conread position:
               321-629
               

               Cow position:
               chr11:31507019-31506717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               230
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               50, 62
               

               Conread position:
               321-636
               

               Cow position:
               chr11:83926222-83925915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 40
               

               Conread position:
               321-657
               

               Cow position:
               chr11:64048581-64048262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               42, 73
               

               Conread position:
               321-677
               

               Cow position:
               chr11:26143907-26144275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               265
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               13, 135
               

               Conread position:
               321-699
               

               Cow position:
               chr11:27913477-27913075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               276
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               42, 137
               

               Conread position:
               321-743
               

               Cow position:
               chr11:2907343-2907769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               301
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               39, 130
               

               Conread position:
               321-744
               

               Cow position:
               chr11:1625031-1625459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               286
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               47, 120
               

               Conread position:
               321-744
               

               Cow position:
               chr11:22977693-22978104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 15
               

               Conread position:
               321-744
               

               Cow position:
               chr11:27747109-27746673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 132
               

               Conread position:
               321-747
               

               Cow position:
               chr11:32072313-32071900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               278
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               289, 13
               

               Conread position:
               321-747
               

               Cow position:
               chr11:40818441-40818886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 24
               

               Conread position:
               321-747
               

               Cow position:
               chr11:67236566-67236160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               296
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               39, 68
               

               Conread position:
               321-754
               

               Cow position:
               chr11:11752345-11752774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               297
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               117, 54
               

               Conread position:
               321-774
               

               Cow position:
               chr11:30476186-30475724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 37
               

               Conread position:
               321-778
               

               Cow position:
               chr11:17889536-17890005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               317
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               42, 133
               

               Conread position:
               321-790
               

               Cow position:
               chr11:52380681-52381162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               319
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               42, 135
               

               Conread position:
               322-637
               

               Cow position:
               chr11:37372481-37372172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               164, 43
               

               Conread position:
               322-737
               

               Cow position:
               chr11:41549148-41549572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 14
               

               Conread position:
               322-743
               

               Cow position:
               chr11:68904899-68905306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               287
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               53, 15
               

               Conread position:
               322-747
               

               Cow position:
               chr11:49149236-49148801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 133
               

               Conread position:
               323-619
               

               Cow position:
               chr11:53445939-53445658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               206
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               153, 40
               

               Conread position:
               323-621
               

               Cow position:
               chr11:63919878-63920169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               218
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               53, 44
               

               Conread position:
               323-657
               

               Cow position:
               chr11:51729463-51729132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 80
               

               Conread position:
               323-737
               

               Cow position:
               chr11:67804926-67804511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 40
               

               Conread position:
               323-747
               

               Cow position:
               chr11:27681670-27681250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               289
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               89, 42
               

               Conread position:
               323-747
               

               Cow position:
               chr11:67600967-67600520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 124
               

               Conread position:
               323-774
               

               Cow position:
               chr11:55762045-55761604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 21
               

               Conread position:
               324-479
               

               Cow position:
               chr11:13404862-13405011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               118
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               39, 65
               

               Conread position:
               324-479
               

               Cow position:
               chr11:42206604-42206443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               36, 127
               

               Conread position:
               324-479
               

               Cow position:
               chr11:84968553-84968399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               38, 68
               

               Conread position:
               324-590
               

               Cow position:
               chr11:69696759-69697016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               43, 123
               

               Conread position:
               324-628
               

               Cow position:
               chr11:49872699-49873015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               44, 133
               

               Conread position:
               324-634
               

               Cow position:
               chr11:70756662-70756348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 129
               

               Conread position:
               324-635
               

               Cow position:
               chr11:30808409-30808736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               228
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               37, 122
               

               Conread position:
               324-636
               

               Cow position:
               chr11:42067052-42066726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               47, 131
               

               Conread position:
               324-636
               

               Cow position:
               chr11:52690336-52690657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 112
               

               Conread position:
               324-642
               

               Cow position:
               chr11:48429307-48428964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               239
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               10, 21
               

               Conread position:
               324-649
               

               Cow position:
               chr11:30211073-30210755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               241
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               37, 61
               

               Conread position:
               324-651
               

               Cow position:
               chr11:71805978-71806294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               164, 40
               

               Conread position:
               324-657
               

               Cow position:
               chr11:15958470-15958144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               243
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               157, 15
               

               Conread position:
               324-666
               

               Cow position:
               chr11:32693306-32693637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 31
               

               Conread position:
               324-670
               

               Cow position:
               chr11:7001761-7002105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               148, 41
               

               Conread position:
               324-715
               

               Cow position:
               chr11:77683340-77682952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               268
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               32, 72
               

               Conread position:
               324-720
               

               Cow position:
               chr11:35724158-35723756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               268
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               39, 117
               

               Conread position:
               324-721
               

               Cow position:
               chr11:2925120-2925512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               277
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               34, 54
               

               Conread position:
               324-733
               

               Cow position:
               chr11:38845099-38845489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               276
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               122, 36
               

               Conread position:
               324-743
               

               Cow position:
               chr11:64335018-64334614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               285
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               34, 128
               

               Conread position:
               324-744
               

               Cow position:
               chr11:36647515-36647116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               298
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               39, 68
               

               Conread position:
               324-745
               

               Cow position:
               chr11:15017246-15016800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               296
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               45, 134
               

               Conread position:
               324-745
               

               Cow position:
               chr11:22931809-22932215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 68
               

               Conread position:
               324-747
               

               Cow position:
               chr11:21843951-21844383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 132
               

               Conread position:
               324-747
               

               Cow position:
               chr11:26535967-26535527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               301
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               37, 126
               

               Conread position:
               324-747
               

               Cow position:
               chr11:30934580-30934178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               284
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               164, 43
               

               Conread position:
               324-747
               

               Cow position:
               chr11:35882079-35881664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 43
               

               Conread position:
               324-747
               

               Cow position:
               chr11:43643921-43644346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               279
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               37, 116
               

               Conread position:
               324-747
               

               Cow position:
               chr11:43646242-43646665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               299
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               152, 59
               

               Conread position:
               324-747
               

               Cow position:
               chr11:47125712-47125318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               279
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               112, 41
               

               Conread position:
               324-753
               

               Cow position:
               chr11:55053051-55052620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               298
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               36, 125
               

               Conread position:
               324-753
               

               Cow position:
               chr11:65495156-65495581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               305
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               32, 128
               

               Conread position:
               324-753
               

               Cow position:
               chr11:66041461-66041020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               303
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               10, 110
               

               Conread position:
               324-754
               

               Cow position:
               chr11:13042960-13043396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 129
               

               Conread position:
               324-754
               

               Cow position:
               chr11:24967607-24967206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               284
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               324-754
               

               Cow position:
               chr11:30708693-30708248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               307
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               32, 122
               

               Conread position:
               324-754
               

               Cow position:
               chr11:42519900-42519487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               289
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               157, 41
               

               Conread position:
               324-754
               

               Cow position:
               chr11:45276960-45277411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               296
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               33, 129
               

               Conread position:
               324-754
               

               Cow position:
               chr11:81143355-81143813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               313
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               10, 130
               

               Conread position:
               324-755
               

               Cow position:
               chr11:44223069-44222644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               290
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               36, 130
               

               Conread position:
               324-774
               

               Cow position:
               chr11:58102569-58103050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               338
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               20, 137
               

               Conread position:
               324-774
               

               Cow position:
               chr11:83043179-83043636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               305
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               47, 128
               

               Conread position:
               324-778
               

               Cow position:
               chr11:43525953-43526400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               306
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               72, 41
               

               Conread position:
               324-778
               

               Cow position:
               chr11:68909665-68910127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 17
               

               Conread position:
               324-780
               

               Cow position:
               chr11:63156756-63157197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               307
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               302, 41
               

               Conread position:
               325-473
               

               Cow position:
               chr11:8421938-8422090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               38, 83
               

               Conread position:
               325-475
               

               Cow position:
               chr11:34279923-34279768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               120
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               75, 37
               

               Conread position:
               325-574
               

               Cow position:
               chr11:51195910-51196153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               185, 40
               

               Conread position:
               325-600
               

               Cow position:
               chr11:80412822-80413112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               31, 136
               

               Conread position:
               325-609
               

               Cow position:
               chr11:63998903-63999198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               32, 133
               

               Conread position:
               325-618
               

               Cow position:
               chr11:29659746-29659443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               212
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               36, 126
               

               Conread position:
               325-640
               

               Cow position:
               chr11:70206502-70206183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               239
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               38, 128
               

               Conread position:
               325-642
               

               Cow position:
               chr11:16541022-16540721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               234
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               158, 42
               

               Conread position:
               325-652
               

               Cow position:
               chr11:70978548-70978886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               246
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               32, 58
               

               Conread position:
               325-663
               

               Cow position:
               chr11:48296212-48295870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               241
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               46, 126
               

               Conread position:
               325-710
               

               Cow position:
               chr11:4207498-4207102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               278
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               38, 27
               

               Conread position:
               325-731
               

               Cow position:
               chr11:21728102-21728499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               285
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               45, 27
               

               Conread position:
               325-744
               

               Cow position:
               chr11:47899437-47899032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               289
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               45, 102
               

               Conread position:
               325-747
               

               Cow position:
               chr11:8828465-8828876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               289
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               47, 58
               

               Conread position:
               325-747
               

               Cow position:
               chr11:13061067-13061471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               286
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               46, 88
               

               Conread position:
               325-747
               

               Cow position:
               chr11:40485791-40486181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               291
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               87, 42
               

               Conread position:
               325-747
               

               Cow position:
               chr11:45890126-45889706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               291
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               158, 40
               

               Conread position:
               325-747
               

               Cow position:
               chr11:46746823-46746387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 134
               

               Conread position:
               325-747
               

               Cow position:
               chr11:53778807-53778365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 135
               

               Conread position:
               325-747
               

               Cow position:
               chr11:55334106-55333661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               312
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               38, 143
               

               Conread position:
               325-747
               

               Cow position:
               chr11:58588514-58588097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 42
               

               Conread position:
               325-754
               

               Cow position:
               chr11:17278496-17278917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 38
               

               Conread position:
               325-754
               

               Cow position:
               chr11:34963238-34962807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 39
               

               Conread position:
               325-754
               

               Cow position:
               chr11:50152626-50153073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 134
               

               Conread position:
               325-754
               

               Cow position:
               chr11:77705939-77705511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 135
               

               Conread position:
               326-474
               

               Cow position:
               chr11:51226814-51226679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               326-479
               

               Cow position:
               chr11:38223608-38223766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               121
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               37, 10
               

               Conread position:
               326-544
               

               Cow position:
               chr11:84977188-84977408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               155, 35
               

               Conread position:
               326-573
               

               Cow position:
               chr11:17721615-17721878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               42, 131
               

               Conread position:
               326-588
               

               Cow position:
               chr11:32398827-32398548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               35, 132
               

               Conread position:
               326-627
               

               Cow position:
               chr11:27719153-27719449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               219
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               33, 94
               

               Conread position:
               326-663
               

               Cow position:
               chr11:80556404-80556058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               228
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               42, 129
               

               Conread position:
               326-679
               

               Cow position:
               chr11:9270552-9270906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 61
               

               Conread position:
               326-709
               

               Cow position:
               chr11:63433879-63434268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               280
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               9, 68
               

               Conread position:
               326-710
               

               Cow position:
               chr11:36286890-36286488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               299
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               44, 17
               

               Conread position:
               326-734
               

               Cow position:
               chr11:18572969-18572569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 41
               

               Conread position:
               326-736
               

               Cow position:
               chr11:65762399-65762833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               299
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               45, 18
               

               Conread position:
               326-737
               

               Cow position:
               chr11:39115659-39115256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               285
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               45, 104
               

               Conread position:
               326-737
               

               Cow position:
               chr11:80923140-80923572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 128
               

               Conread position:
               326-743
               

               Cow position:
               chr11:258987-259422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               286
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               29, 98
               

               Conread position:
               326-743
               

               Cow position:
               chr11:17859967-17860397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               301
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               32, 126
               

               Conread position:
               326-743
               

               Cow position:
               chr11:83398093-83397661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               295
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               37, 127
               

               Conread position:
               326-747
               

               Cow position:
               chr11:46580534-46580119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               276
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               83, 41
               

               Conread position:
               326-747
               

               Cow position:
               chr11:65826568-65826979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               292
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               32, 127
               

               Conread position:
               326-747
               

               Cow position:
               chr11:66188135-66188569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 109
               

               Conread position:
               326-753
               

               Cow position:
               chr11:52297037-52297477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 128
               

               Conread position:
               326-754
               

               Cow position:
               chr11:16001092-16000672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               282
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               155, 39
               

               Conread position:
               327-479
               

               Cow position:
               chr11:58186057-58185904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               126
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               36, 81
               

               Conread position:
               327-534
               

               Cow position:
               chr11:46427222-46427447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               33, 130
               

               Conread position:
               327-550
               

               Cow position:
               chr11:78820334-78820098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               36, 111
               

               Conread position:
               327-584
               

               Cow position:
               chr11:84890542-84890805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               208
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               17, 86
               

               Conread position:
               327-626
               

               Cow position:
               chr11:83032862-83032558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               209
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               36, 126
               

               Conread position:
               327-635
               

               Cow position:
               chr11:9368991-9368694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               137, 40
               

               Conread position:
               327-638
               

               Cow position:
               chr11:27907955-27907654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               36, 118
               

               Conread position:
               327-710
               

               Cow position:
               chr11:16232769-16233141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               273
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               83, 40
               

               Conread position:
               327-747
               

               Cow position:
               chr11:18699055-18698627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 87
               

               Conread position:
               327-752
               

               Cow position:
               chr11:13040003-13040416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               305
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               156, 83
               

               Conread position:
               327-754
               

               Cow position:
               chr11:65988386-65987975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               286
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               33, 64
               

               Conread position:
               327-754
               

               Cow position:
               chr11:74316891-74316451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               291
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               34, 128
               

               Conread position:
               327-761
               

               Cow position:
               chr11:77745063-77745511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               308
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               17, 133
               

               Conread position:
               327-785
               

               Cow position:
               chr11:38639284-38638835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 89
               

               Conread position:
               328-526
               

               Cow position:
               chr11:35276435-35276248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               32, 51
               

               Conread position:
               328-607
               

               Cow position:
               chr11:8584500-8584214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               6, 88
               

               Conread position:
               328-609
               

               Cow position:
               chr11:67871439-67871713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               47, 55
               

               Conread position:
               328-627
               

               Cow position:
               chr11:81167847-81168158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               32, 127
               

               Conread position:
               328-634
               

               Cow position:
               chr11:62742464-62742766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               30, 126
               

               Conread position:
               328-653
               

               Cow position:
               chr11:48306192-48306496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               228
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               328-689
               

               Cow position:
               chr11:41133896-41134255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               252
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               30, 128
               

               Conread position:
               328-696
               

               Cow position:
               chr11:13592923-13592541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               275
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               35, 132
               

               Conread position:
               328-700
               

               Cow position:
               chr11:6245505-6245113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               271
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               35, 135
               

               Conread position:
               328-704
               

               Cow position:
               chr11:68913327-68912938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               275
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               42, 133
               

               Conread position:
               328-718
               

               Cow position:
               chr11:77546580-77546200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               263
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               35, 62
               

               Conread position:
               328-742
               

               Cow position:
               chr11:82940446-82940860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 96
               

               Conread position:
               328-742
               

               Cow position:
               chr11:84385455-84385888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               306
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               9, 111
               

               Conread position:
               328-743
               

               Cow position:
               chr11:4436517-4436089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               297
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               11, 231
               

               Conread position:
               328-743
               

               Cow position:
               chr11:23251415-23251847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               300
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               42, 105
               

               Conread position:
               328-743
               

               Cow position:
               chr11:26117555-26117960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               279
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               33, 141
               

               Conread position:
               328-743
               

               Cow position:
               chr11:63065836-63065410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               302
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               33, 128
               

               Conread position:
               328-744
               

               Cow position:
               chr11:7924420-7924834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 118
               

               Conread position:
               328-747
               

               Cow position:
               chr11:6233694-6234126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 130
               

               Conread position:
               328-747
               

               Cow position:
               chr11:31413641-31413203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               291
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               32, 225
               

               Conread position:
               328-747
               

               Cow position:
               chr11:35153636-35154075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               299
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               51, 132
               

               Conread position:
               328-747
               

               Cow position:
               chr11:41985864-41986291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 126
               

               Conread position:
               328-747
               

               Cow position:
               chr11:47193678-47193276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               285
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               152, 42
               

               Conread position:
               328-747
               

               Cow position:
               chr11:65157221-65157655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               292
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               35, 131
               

               Conread position:
               328-754
               

               Cow position:
               chr11:64029083-64029511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               290
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               43, 111
               

               Conread position:
               328-762
               

               Cow position:
               chr11:35347567-35348020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               297
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               42, 113
               

               Conread position:
               328-762
               

               Cow position:
               chr11:35580445-35579991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               298
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               41, 133
               

               Conread position:
               328-762
               

               Cow position:
               chr11:79728488-79728936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 39
               

               Conread position:
               328-774
               

               Cow position:
               chr11:51687552-51688001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               296
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               35, 60
               

               Conread position:
               328-778
               

               Cow position:
               chr11:48932405-48932865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 93
               

               Conread position:
               328-806
               

               Cow position:
               chr11:37975103-37974618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               306
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               155, 44
               

               Conread position:
               329-470
               

               Cow position:
               chr11:1842140-1841994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               34, 120
               

               Conread position:
               329-472
               

               Cow position:
               chr11:15999830-15999686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               115
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               61, 11
               

               Conread position:
               329-649
               

               Cow position:
               chr11:23407643-23407313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               34, 123
               

               Conread position:
               329-657
               

               Cow position:
               chr11:55494847-55494523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               159, 38
               

               Conread position:
               329-676
               

               Cow position:
               chr11:30830440-30830791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               33, 118
               

               Conread position:
               329-743
               

               Cow position:
               chr11:78380886-78381290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               293
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               34, 123
               

               Conread position:
               329-744
               

               Cow position:
               chr11:77758577-77759005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 60
               

               Conread position:
               329-752
               

               Cow position:
               chr11:2917410-2917833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 112
               

               Conread position:
               329-764
               

               Cow position:
               chr11:75479840-75480291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               305
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               34, 11
               

               Conread position:
               329-778
               

               Cow position:
               chr11:38236428-38235963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 38
               

               Conread position:
               329-785
               

               Cow position:
               chr11:44032189-44031712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 121
               

               Conread position:
               330-543
               

               Cow position:
               chr11:39250146-39249924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               28, 115
               

               Conread position:
               330-747
               

               Cow position:
               chr11:62663059-62663480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               294
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               17, 120
               

               Conread position:
               330-760
               

               Cow position:
               chr11:45646416-45646855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               297
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               22, 10
               

               Conread position:
               330-778
               

               Cow position:
               chr11:15285442-15285898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               304
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               41, 50
               

               Conread position:
               331-634
               

               Cow position:
               chr11:57873989-57873696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               217
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               32, 138
               

               Conread position:
               332-542
               

               Cow position:
               chr11:63485112-63484898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               27, 119
               

               Conread position:
               332-557
               

               Cow position:
               chr11:58927748-58927518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               29, 106
               

               Conread position:
               332-583
               

               Cow position:
               chr11:41313482-41313740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 121
               

               Conread position:
               332-656
               

               Cow position:
               chr11:63435702-63435362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 126
               

               Conread position:
               333-672
               

               Cow position:
               chr11:30209644-30209992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               238
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               31, 106
               

               Conread position:
               333-743
               

               Cow position:
               chr11:19247026-19247438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 118
               

               Conread position:
               333-744
               

               Cow position:
               chr11:48544615-48544199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               292
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               38, 97
               

               Conread position:
               333-747
               

               Cow position:
               chr11:63470037-63469635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               272
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               11, 53
               

               Conread position:
               333-749
               

               Cow position:
               chr11:62620555-62620135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               281
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               30, 125
               

               Conread position:
               334-672
               

               Cow position:
               chr11:71390396-71390734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               29, 62
               

               Conread position:
               334-697
               

               Cow position:
               chr11:21852138-21852503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 51
               

               Conread position:
               334-747
               

               Cow position:
               chr11:3393043-3393458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               284
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               60, 14
               

               Conread position:
               334-774
               

               Cow position:
               chr11:61427746-61427339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               306
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               27, 57
               

               Conread position:
               335-535
               

               Cow position:
               chr11:29786316-29786539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               23, 127
               

               Conread position:
               338-542
               

               Cow position:
               chr11:35109366-35109585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               22, 106
               

               Conread position:
               338-754
               

               Cow position:
               chr11:23137891-23138316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 9
               

               Conread position:
               340-570
               

               Cow position:
               chr11:57608294-57608527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               30, 84
               

               Conread position:
               340-573
               

               Cow position:
               chr11:36920406-36920653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               23, 212
               

               Conread position:
               340-639
               

               Cow position:
               chr11:5211554-5211877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               231
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               25, 167
               

               Conread position:
               343-580
               

               Cow position:
               chr11:18543352-18543589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               29, 103
               

               Conread position:
               343-690
               

               Cow position:
               chr11:42296458-42296805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               245
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               20, 106
               

               Conread position:
               343-730
               

               Cow position:
               chr11:60301808-60302188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               263
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               27, 108
               

               Conread position:
               344-675
               

               Cow position:
               chr11:71009275-71008961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               141, 23
               

               Conread position:
               344-747
               

               Cow position:
               chr11:73353899-73354301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 71
               

               Conread position:
               345-584
               

               Cow position:
               chr11:27565483-27565251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               18, 47
               

               Conread position:
               345-746
               

               Cow position:
               chr11:34121362-34120951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               275
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               16, 89
               

               Conread position:
               346-590
               

               Cow position:
               chr11:19586607-19586364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               56, 17
               

               Conread position:
               346-744
               

               Cow position:
               chr11:24602123-24601726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               275
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               17, 66
               

               Conread position:
               355-753
               

               Cow position:
               chr11:59463489-59463889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               278
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               7, 80
               

               Conread position:
               356-676
               

               Cow position:
               chr11:28993597-28993904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               230
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               5, 54
               

               Conread position:
               356-808
               

               Cow position:
               chr11:71868453-71868913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               316
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               29, 92
               

               Conread position:
               357-600
               

               Cow position:
               chr11:35926759-35927007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               33, 81
               

               Conread position:
               357-601
               

               Cow position:
               chr11:53510352-53510605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               43, 95
               

               Conread position:
               357-789
               

               Cow position:
               chr11:8988087-8988521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 73
               

               Conread position:
               359-747
               

               Cow position:
               chr11:43430310-43430694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               279
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               50, 16
               

               Conread position:
               360-473
               

               Cow position:
               chr11:62081826-62081940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               97
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               36, 86
               

               Conread position:
               360-507
               

               Cow position:
               chr11:79707849-79707701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               119, 84
               

               Conread position:
               360-526
               

               Cow position:
               chr11:64409112-64408945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               33, 78
               

               Conread position:
               360-591
               

               Cow position:
               chr11:30370248-30370016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               45, 71
               

               Conread position:
               360-643
               

               Cow position:
               chr11:85703835-85703564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               40, 113
               

               Conread position:
               360-743
               

               Cow position:
               chr11:68206700-68207081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               268
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               46, 88
               

               Conread position:
               360-747
               

               Cow position:
               chr11:49934597-49934989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 30
               

               Conread position:
               360-747
               

               Cow position:
               chr11:65409025-65409405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               272
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               130, 28
               

               Conread position:
               360-754
               

               Cow position:
               chr11:45872164-45872573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               272
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               47, 76
               

               Conread position:
               361-515
               

               Cow position:
               chr11:9699034-9698882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               122, 29
               

               Conread position:
               361-657
               

               Cow position:
               chr11:39499500-39499202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               42, 88
               

               Conread position:
               361-723
               

               Cow position:
               chr11:81406022-81406381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               242
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               38, 72
               

               Conread position:
               361-747
               

               Cow position:
               chr11:20602363-20601992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 28
               

               Conread position:
               361-754
               

               Cow position:
               chr11:81162302-81162686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               257
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               114, 47
               

               Conread position:
               365-611
               

               Cow position:
               chr11:18587461-18587718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               115, 79
               

               Conread position:
               367-726
               

               Cow position:
               chr11:17574218-17574546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               247
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               367-744
               

               Cow position:
               chr11:59873062-59872681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 174
               

               Conread position:
               368-754
               

               Cow position:
               chr11:53147399-53147795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 77
               

               Conread position:
               371-593
               

               Cow position:
               chr11:4199401-4199179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               29, 75
               

               Conread position:
               372-681
               

               Cow position:
               chr11:70086462-70086142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               235
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               31, 74
               

               Conread position:
               373-743
               

               Cow position:
               chr11:8524985-8525357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               254
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               22, 44
               

               Conread position:
               373-747
               

               Cow position:
               chr11:34467695-34467355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               262
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               33, 73
               

               Conread position:
               373-747
               

               Cow position:
               chr11:48474831-48474461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 76
               

               Conread position:
               378-795
               

               Cow position:
               chr11:46747739-46748165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 66
               

               Conread position:
               380-735
               

               Cow position:
               chr11:71501012-71501358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               24, 44
               

               Conread position:
               382-639
               

               Cow position:
               chr11:46999096-46998849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               98, 64
               

               Conread position:
               382-744
               

               Cow position:
               chr11:76114760-76114410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 62
               

               Conread position:
               382-747
               

               Cow position:
               chr11:33311095-33310723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 62
               

               Conread position:
               382-754
               

               Cow position:
               chr11:20761960-20761590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               257
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               88, 62
               

               Conread position:
               383-747
               

               Cow position:
               chr11:64089981-64090334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               242
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               16, 7
               

               Conread position:
               385-635
               

               Cow position:
               chr11:39118874-39118618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               23, 54
               

               Conread position:
               385-641
               

               Cow position:
               chr11:71807453-71807710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               81, 7
               

               Conread position:
               386-743
               

               Cow position:
               chr11:47545250-47544884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               255
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               41, 63
               

               Conread position:
               387-743
               

               Cow position:
               chr11:44036834-44036472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               28, 61
               

               Conread position:
               388-589
               

               Cow position:
               chr11:7013635-7013833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               11, 25
               

               Conread position:
               388-718
               

               Cow position:
               chr11:36238889-36238563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               240
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               91, 56
               

               Conread position:
               388-747
               

               Cow position:
               chr11:77750660-77751015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               251
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               18, 41
               

               Conread position:
               389-531
               

               Cow position:
               chr11:58938634-58938781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               111
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               95, 55
               

               Conread position:
               389-584
               

               Cow position:
               chr11:22747220-22747414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               93, 55
               

               Conread position:
               389-584
               

               Cow position:
               chr11:79018948-79019145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               85, 55
               

               Conread position:
               389-628
               

               Cow position:
               chr11:4652862-4653108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               99, 59
               

               Conread position:
               389-712
               

               Cow position:
               chr11:61958634-61958962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               236
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               95, 37
               

               Conread position:
               389-732
               

               Cow position:
               chr11:32436443-32436096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               250
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               95, 21
               

               Conread position:
               389-747
               

               Cow position:
               chr11:23232409-23232761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 55
               

               Conread position:
               389-762
               

               Cow position:
               chr11:70836266-70836630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               101, 50
               

               Conread position:
               390-531
               

               Cow position:
               chr11:58173734-58173589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               85, 53
               

               Conread position:
               390-538
               

               Cow position:
               chr11:56290621-56290468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               114
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               86, 54
               

               Conread position:
               390-542
               

               Cow position:
               chr11:70826058-70825901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               117
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               94, 54
               

               Conread position:
               390-552
               

               Cow position:
               chr11:67312890-67312723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               89, 54
               

               Conread position:
               390-588
               

               Cow position:
               chr11:62778551-62778358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               93, 54
               

               Conread position:
               390-588
               

               Cow position:
               chr11:82289688-82289486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               85, 54
               

               Conread position:
               390-601
               

               Cow position:
               chr11:6633820-6633604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               86, 54
               

               Conread position:
               390-626
               

               Cow position:
               chr11:41293708-41293944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               98, 54
               

               Conread position:
               390-636
               

               Cow position:
               chr11:43008210-43008441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               390-644
               

               Cow position:
               chr11:40573226-40573476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               85, 56
               

               Conread position:
               390-646
               

               Cow position:
               chr11:83033130-83033381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               93, 47
               

               Conread position:
               390-650
               

               Cow position:
               chr11:63917367-63917616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               98, 54
               

               Conread position:
               390-655
               

               Cow position:
               chr11:70278003-70278263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               94, 54
               

               Conread position:
               390-656
               

               Cow position:
               chr11:47004455-47004193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               205
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               22, 33
               

               Conread position:
               390-657
               

               Cow position:
               chr11:6202554-6202290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               195
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               8, 152
               

               Conread position:
               390-663
               

               Cow position:
               chr11:63499213-63499486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               87, 28
               

               Conread position:
               390-667
               

               Cow position:
               chr11:40478743-40479021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               91, 54
               

               Conread position:
               390-679
               

               Cow position:
               chr11:38577669-38577947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               204
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               85, 54
               

               Conread position:
               390-684
               

               Cow position:
               chr11:16906941-16907227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 54
               

               Conread position:
               390-685
               

               Cow position:
               chr11:27932390-27932084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               74, 20
               

               Conread position:
               390-689
               

               Cow position:
               chr11:72375566-72375874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 161
               

               Conread position:
               390-703
               

               Cow position:
               chr11:27765264-27764949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               228
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               25, 57
               

               Conread position:
               390-722
               

               Cow position:
               chr11:23586748-23586413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               242
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               85, 54
               

               Conread position:
               390-737
               

               Cow position:
               chr11:36658714-36659050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 32
               

               Conread position:
               390-743
               

               Cow position:
               chr11:36849027-36848688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               240
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               14, 55
               

               Conread position:
               390-743
               

               Cow position:
               chr11:50073047-50072718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               260
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               94, 54
               

               Conread position:
               390-743
               

               Cow position:
               chr11:63482321-63482669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 20
               

               Conread position:
               390-743
               

               Cow position:
               chr11:70838180-70838546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               92, 50
               

               Conread position:
               390-744
               

               Cow position:
               chr11:9836997-9837341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               73, 45
               

               Conread position:
               390-747
               

               Cow position:
               chr11:28644197-28643834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               84, 54
               

               Conread position:
               390-747
               

               Cow position:
               chr11:48272310-48271947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 54
               

               Conread position:
               390-747
               

               Cow position:
               chr11:54334438-54334087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               245
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               111, 54
               

               Conread position:
               390-747
               

               Cow position:
               chr11:63847954-63847602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 26
               

               Conread position:
               390-747
               

               Cow position:
               chr11:73924451-73924806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               249
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               14, 54
               

               Conread position:
               390-753
               

               Cow position:
               chr11:71168475-71168831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               256
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               25, 157
               

               Conread position:
               390-754
               

               Cow position:
               chr11:18086238-18086593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               239, 54
               

               Conread position:
               390-754
               

               Cow position:
               chr11:38071457-38071110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               240
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               30, 39
               

               Conread position:
               390-762
               

               Cow position:
               chr11:17831111-17831490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 57
               

               Conread position:
               390-765
               

               Cow position:
               chr11:33753800-33754165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               266
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               19, 50
               

               Conread position:
               390-778
               

               Cow position:
               chr11:60470089-60470462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               276
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               210, 32
               

               Conread position:
               390-778
               

               Cow position:
               chr11:62150784-62151162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               264
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               89, 54
               

               Conread position:
               391-548
               

               Cow position:
               chr11:84498846-84499001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               90, 53
               

               Conread position:
               391-550
               

               Cow position:
               chr11:82730889-82731054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               92, 51
               

               Conread position:
               391-588
               

               Cow position:
               chr11:30272831-30273022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               177, 51
               

               Conread position:
               391-600
               

               Cow position:
               chr11:71341356-71341566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               83, 53
               

               Conread position:
               391-734
               

               Cow position:
               chr11:23385134-23385479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               233
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               27, 36
               

               Conread position:
               391-743
               

               Cow position:
               chr11:34829677-34830023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               322, 53
               

               Conread position:
               391-746
               

               Cow position:
               chr11:2092436-2092093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               238
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               84, 35
               

               Conread position:
               391-747
               

               Cow position:
               chr11:1070982-1071339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               245
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               97, 53
               

               Conread position:
               392-639
               

               Cow position:
               chr11:69307621-69307362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               87, 52
               

               Conread position:
               392-684
               

               Cow position:
               chr11:30955108-30954815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               81, 52
               

               Conread position:
               392-747
               

               Cow position:
               chr11:7590296-7589943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 52
               

               Conread position:
               392-762
               

               Cow position:
               chr11:83066595-83066233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               298, 52
               

               Conread position:
               392-774
               

               Cow position:
               chr11:48650893-48650519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               91, 18
               

               Conread position:
               393-549
               

               Cow position:
               chr11:62609711-62609551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               119
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               89, 51
               

               Conread position:
               393-620
               

               Cow position:
               chr11:375566-375335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               62, 51
               

               Conread position:
               393-754
               

               Cow position:
               chr11:80530465-80530116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               247, 53
               

               Conread position:
               393-773
               

               Cow position:
               chr11:62155745-62155351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 51
               

               Conread position:
               393-786
               

               Cow position:
               chr11:10388518-10388885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               272
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               242, 48
               

               Conread position:
               393-806
               

               Cow position:
               chr11:5031670-5032084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 16
               

               Conread position:
               394-532
               

               Cow position:
               chr11:53717701-53717844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               110
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               89, 52
               

               Conread position:
               394-627
               

               Cow position:
               chr11:33345551-33345317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               88, 50
               

               Conread position:
               394-676
               

               Cow position:
               chr11:63909561-63909833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               209
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               90, 50
               

               Conread position:
               394-721
               

               Cow position:
               chr11:34144819-34145138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               296, 50
               

               Conread position:
               394-747
               

               Cow position:
               chr11:29946807-29947174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 51
               

               Conread position:
               394-747
               

               Cow position:
               chr11:77128766-77128421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 55
               

               Conread position:
               394-778
               

               Cow position:
               chr11:43898244-43897857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               264
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               96, 50
               

               Conread position:
               395-542
               

               Cow position:
               chr11:81931012-81931159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               111
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               84, 51
               

               Conread position:
               395-553
               

               Cow position:
               chr11:3283128-3282973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               93, 49
               

               Conread position:
               395-632
               

               Cow position:
               chr11:64867917-64868146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               89, 14
               

               Conread position:
               395-672
               

               Cow position:
               chr11:53512188-53511910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               23, 41
               

               Conread position:
               395-688
               

               Cow position:
               chr11:15373944-15373664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               212
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               26, 36
               

               Conread position:
               395-742
               

               Cow position:
               chr11:56654662-56654304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               253
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               21, 51
               

               Conread position:
               395-747
               

               Cow position:
               chr11:9221627-9221973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 51
               

               Conread position:
               395-747
               

               Cow position:
               chr11:36799203-36799546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               249
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               80, 35
               

               Conread position:
               396-607
               

               Cow position:
               chr11:14466383-14466595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               87, 48
               

               Conread position:
               396-747
               

               Cow position:
               chr11:83230297-83230634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               252
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               87, 50
               

               Conread position:
               396-748
               

               Cow position:
               chr11:67747383-67747033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               95, 32
               

               Conread position:
               397-774
               

               Cow position:
               chr11:44642191-44642561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 17
               

               Conread position:
               398-686
               

               Cow position:
               chr11:48650074-48649794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               206
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               86, 48
               

               Conread position:
               399-743
               

               Cow position:
               chr11:34032098-34032441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 147
               

               Conread position:
               399-747
               

               Cow position:
               chr11:1362367-1362728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 45
               

               Conread position:
               399-747
               

               Cow position:
               chr11:17321750-17321410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               241
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               47, 14
               

               Conread position:
               399-754
               

               Cow position:
               chr11:58400349-58400010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               240
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               89, 45
               

               Conread position:
               399-754
               

               Cow position:
               chr11:76606773-76606432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               256
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               85, 45
               

               Conread position:
               400-722
               

               Cow position:
               chr11:17661183-17660872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               291, 43
               

               Conread position:
               400-743
               

               Cow position:
               chr11:30925254-30924909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               233
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               83, 40
               

               Conread position:
               400-743
               

               Cow position:
               chr11:56518212-56518556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 29
               

               Conread position:
               400-748
               

               Cow position:
               chr11:42359219-42358876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               44, 30
               

               Conread position:
               401-621
               

               Cow position:
               chr11:3740052-3739833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               83, 45
               

               Conread position:
               401-636
               

               Cow position:
               chr11:46953046-46952815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               82, 43
               

               Conread position:
               401-743
               

               Cow position:
               chr11:61454418-61454778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 47
               

               Conread position:
               401-744
               

               Cow position:
               chr11:8840657-8840985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               250
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               40, 65
               

               Conread position:
               401-753
               

               Cow position:
               chr11:40792606-40792948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               244
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               21, 28
               

               Conread position:
               401-754
               

               Cow position:
               chr11:80761279-80761634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               249
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               19, 26
               

               Conread position:
               401-756
               

               Cow position:
               chr11:8147800-8148144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 43
               

               Conread position:
               401-785
               

               Cow position:
               chr11:25387167-25386783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               263
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               72, 45
               

               Conread position:
               402-685
               

               Cow position:
               chr11:1157741-1157460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               82, 42
               

               Conread position:
               402-747
               

               Cow position:
               chr11:22499269-22499599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               242
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               74, 42
               

               Conread position:
               402-747
               

               Cow position:
               chr11:58990590-58990263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               244
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               78, 42
               

               Conread position:
               403-743
               

               Cow position:
               chr11:64905094-64904752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               243
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               80, 30
               

               Conread position:
               403-744
               

               Cow position:
               chr11:39809085-39808744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               78, 40
               

               Conread position:
               403-747
               

               Cow position:
               chr11:377545-377896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 43
               

               Conread position:
               403-747
               

               Cow position:
               chr11:20491664-20491324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               236
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               78, 41
               

               Conread position:
               403-747
               

               Cow position:
               chr11:46413669-46413329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               37, 86
               

               Conread position:
               403-747
               

               Cow position:
               chr11:50951651-50951303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               246
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               78, 23
               

               Conread position:
               403-778
               

               Cow position:
               chr11:10213472-10213845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               256
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               60, 41
               

               Conread position:
               404-659
               

               Cow position:
               chr11:86720322-86720569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               17, 43
               

               Conread position:
               404-732
               

               Cow position:
               chr11:12949853-12950182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               75, 36
               

               Conread position:
               404-747
               

               Cow position:
               chr11:19238070-19238403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               230
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               127, 45
               

               Conread position:
               404-747
               

               Cow position:
               chr11:23128444-23128787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               235
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               85, 40
               

               Conread position:
               404-754
               

               Cow position:
               chr11:26483801-26483464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               81, 22
               

               Conread position:
               405-732
               

               Cow position:
               chr11:42043902-42044223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 25
               

               Conread position:
               405-795
               

               Cow position:
               chr11:44234450-44234061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               270
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               86, 38
               

               Conread position:
               407-644
               

               Cow position:
               chr11:67246878-67246649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               181
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               73, 41
               

               Conread position:
               408-752
               

               Cow position:
               chr11:33527144-33526820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               242
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               61, 42
               

               Conread position:
               409-610
               

               Cow position:
               chr11:46592553-46592357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               75, 19
               

               Conread position:
               409-724
               

               Cow position:
               chr11:69810994-69810679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               222
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               51, 37
               

               Conread position:
               409-778
               

               Cow position:
               chr11:35873912-35874265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               256
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               66, 35
               

               Conread position:
               410-743
               

               Cow position:
               chr11:53452260-53452589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               217
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               73, 39
               

               Conread position:
               410-748
               

               Cow position:
               chr11:40396403-40396077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               235
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               74, 16
               

               Conread position:
               411-747
               

               Cow position:
               chr11:64638437-64638771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 37
               

               Conread position:
               412-747
               

               Cow position:
               chr11:3833276-3833595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               243
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               76, 32
               

               Conread position:
               412-752
               

               Cow position:
               chr11:40258322-40258654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               247
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               10, 34
               

               Conread position:
               413-747
               

               Cow position:
               chr11:31352465-31352820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               63, 31
               

               Conread position:
               413-747
               

               Cow position:
               chr11:67745406-67745080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               68, 13
               

               Conread position:
               413-754
               

               Cow position:
               chr11:25331659-25331984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               230
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               70, 36
               

               Conread position:
               413-764
               

               Cow position:
               chr11:45897963-45898320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 35
               

               Conread position:
               414-652
               

               Cow position:
               chr11:52983761-52983525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               70, 30
               

               Conread position:
               416-673
               

               Cow position:
               chr11:21438292-21438043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               65, 30
               

               Conread position:
               419-747
               

               Cow position:
               chr11:56892897-56892571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               42, 25
               

               Conread position:
               420-747
               

               Cow position:
               chr11:17192201-17192529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               221
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               61, 109
               

               Conread position:
               420-753
               

               Cow position:
               chr11:51144793-51144464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               249
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               62, 24
               

               Conread position:
               428-747
               

               Cow position:
               chr11:27939554-27939239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               228
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               51, 7
               

               Conread position:
               429-735
               

               Cow position:
               chr11:58313310-58313004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               203
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               19, 63
               

               Conread position:
               429-747
               

               Cow position:
               chr11:1668740-1668430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               55, 15
               

               Conread position:
               429-747
               

               Cow position:
               chr11:32378263-32377940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               222
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               6, 135
               

               Conread position:
               429-747
               

               Cow position:
               chr11:65159382-65159694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               79, 25
               

               Conread position:
               430-608
               

               Cow position:
               chr11:75965582-75965757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               139
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               51, 14
               

               Conread position:
               431-672
               

               Cow position:
               chr11:41175880-41176121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               53, 12
               

               Conread position:
               431-778
               

               Cow position:
               chr11:70273375-70273021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               247
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               43, 15
               

               Conread position:
               432-747
               

               Cow position:
               chr11:62880564-62880871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               197, 12
               

               Conread position:
               434-752
               

               Cow position:
               chr11:16261959-16262285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               49, 15
               

               Conread position:
               435-718
               

               Cow position:
               chr11:61858838-61859118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               49, 9
               

               Conread position:
               435-774
               

               Cow position:
               chr11:51043865-51044212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               247
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               15, 109
               

               Conread position:
               440-747
               

               Cow position:
               chr11:48697506-48697200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               226
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               12, 102
               

               Conread position:
               444-734
               

               Cow position:
               chr11:18340984-18341273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               214
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               46, 98
               

               Conread position:
               448-743
               

               Cow position:
               chr11:30120609-30120905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 84
               

               Conread position:
               449-600
               

               Cow position:
               chr11:12368752-12368596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               123
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               30, 116
               

               Conread position:
               449-720
               

               Cow position:
               chr11:77766543-77766822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               35, 146
               

               Conread position:
               451-747
               

               Cow position:
               chr11:24585227-24584933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               8, 36
               

               Conread position:
               452-778
               

               Cow position:
               chr11:80787858-80788189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               217
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               32, 93
               

               Conread position:
               452-785
               

               Cow position:
               chr11:4732391-4732051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               221
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               31, 94
               

               Conread position:
               454-747
               

               Cow position:
               chr11:2309912-2309626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               233, 19
               

               Conread position:
               454-754
               

               Cow position:
               chr11:21798977-21798696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               5, 84
               

               Conread position:
               456-747
               

               Cow position:
               chr11:37347516-37347227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               157, 28
               

               Conread position:
               465-743
               

               Cow position:
               chr11:73478638-73478377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               228, 70
               

               Conread position:
               474-672
               

               Cow position:
               chr11:52935893-52936078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               141
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               475-723
               

               Cow position:
               chr11:61246440-61246681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               174
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               162, 9
               

               Conread position:
               477-731
               

               Cow position:
               chr11:18388856-18389094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               59, 7
               

               Conread position:
               477-754
               

               Cow position:
               chr11:56728966-56728692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               50, 9
               

               Conread position:
               479-747
               

               Cow position:
               chr11:62739238-62738968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               28, 46
               

               Conread position:
               481-627
               

               Cow position:
               chr11:31526453-31526594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               483-650
               

               Cow position:
               chr11:51626976-51626813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               159, 53
               

               Conread position:
               483-657
               

               Cow position:
               chr11:21427981-21428150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               149, 53
               
UCSC Genome Browser
               Conread position:
               483-662
               

               Cow position:
               chr11:57170818-57170992 (view  custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               177, 55
               
UCSC Genome Browser
               
               
               
Conread position: 483-743

               
               
               
Cow position: chr11:8827791-8827536 (view  custom track)

               
               
               
Alignm length: 265

               
               
               
Alignm identity: 183

               
               
               
Alignm E-value: 2e-29

               
               
               
Alignm gaps (pig, cow): 153, 57
UCSC Genome Browser
               
               
               
Conread position: 483-743

               
               
               
Cow position: chr11:18066816-18067086 (view  custom track)

               
               
               
Alignm length: 276

               
               
               
Alignm identity: 190

               
               
               
Alignm E-value: 5e-28

               
               
               
Alignm gaps (pig, cow): 141, 62

               
               
               Conread position:483-747
               
               
               Cow position:chr11:38810337-38810598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):141, 17

               
               
               Conread position:483-747
               
               
               Cow position:chr11:62979502-62979230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):146, 56

               
               
               Conread position:483-754
               
               
               Cow position:chr11:83196509-83196244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):185, 22

               
               
               Conread position:483-788
               
               
               Cow position:chr11:10076780-10076484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):104, 54

               
               
               Conread position:483-809
               
               
               Cow position:chr11:27386327-27386650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):149, 56

               
               
               Conread position:484-754
               
               
               Cow position:chr11:53130824-53130557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):156, 53

               
               
               Conread position:486-644
               
               
               Cow position:chr11:65435863-65435710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):154, 41

               
               
               Conread position:486-689
               
               
               Cow position:chr11:48042026-48042228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):139, 51

               
               
               Conread position:486-689
               
               
               Cow position:chr11:67136419-67136628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):148, 125

               
               
               Conread position:486-721
               
               
               Cow position:chr11:2811721-2811945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:486-743
               
               
               Cow position:chr11:42232617-42232373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:486-747
               
               
               Cow position:chr11:16251235-16251496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):205, 54

               
               
               Conread position:486-747
               
               
               Cow position:chr11:42792964-42793223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):204, 47

               
               
               Conread position:486-753
               
               
               Cow position:chr11:4412013-4412271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):201, 58

               
               
               Conread position:486-762
               
               
               Cow position:chr11:53313563-53313831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):204, 19

               
               
               Conread position:486-764
               
               
               Cow position:chr11:30597002-30596732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):49, 113

               
               
               Conread position:486-767
               
               
               Cow position:chr11:29916550-29916270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):51, 121

               
               
               Conread position:486-778
               
               
               Cow position:chr11:2788402-2788099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 122

               
               
               Conread position:486-785
               
               
               Cow position:chr11:15504121-15503814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:486-785
               
               
               Cow position:chr11:41811906-41812199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):148, 40

               
               
               Conread position:486-795
               
               
               Cow position:chr11:33293770-33294088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):99, 51

               
               
               Conread position:487-688
               
               
               Cow position:chr11:36672036-36672235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):142, 50

               
               
               Conread position:487-743
               
               
               Cow position:chr11:6835542-6835285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):204, 52

               
               
               Conread position:487-743
               
               
               Cow position:chr11:38194165-38193908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):139, 57

               
               
               Conread position:487-747
               
               
               Cow position:chr11:32610006-32609744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):204, 55

               
               
               Conread position:488-754
               
               
               Cow position:chr11:81174893-81174635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):152, 49

               
               
               Conread position:488-806
               
               
               Cow position:chr11:37068310-37068611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):135, 49

               
               
               Conread position:489-732
               
               
               Cow position:chr11:59155871-59156104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:489-785
               
               
               Cow position:chr11:17112624-17112914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):14, 57

               
               
               Conread position:490-679
               
               
               Cow position:chr11:15525972-15525775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):58, 105

               
               
               Conread position:490-754
               
               
               Cow position:chr11:85764940-85764697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:490-760
               
               
               Cow position:chr11:5677728-5677458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):139, 37

               
               
               Conread position:491-764
               
               
               Cow position:chr11:77208044-77207784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:494-747
               
               
               Cow position:chr11:18210347-18210596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):197, 41

               
               
               Conread position:494-747
               
               
               Cow position:chr11:56796739-56796985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):117, 57

               
               
               Conread position:494-760
               
               
               Cow position:chr11:30110963-30110707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):117, 53

               
               
               Conread position:494-762
               
               
               Cow position:chr11:71455793-71455525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):148, 29

               
               
               Conread position:497-734
               
               
               Cow position:chr11:35668713-35668953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):120, 40

               
               
               Conread position:497-756
               
               
               Cow position:chr11:2050584-2050323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):28, 13

               
               
               Conread position:497-778
               
               
               Cow position:chr11:68570671-68570952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):143, 43

               
               
               Conread position:498-754
               
               
               Cow position:chr11:16910368-16910622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):139, 39

               
               
               Conread position:498-808
               
               
               Cow position:chr11:1485362-1485670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:499-639
               
               
               Cow position:chr11:86894678-86894540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:499-720
               
               
               Cow position:chr11:21830352-21830573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):40, 48

               
               
               Conread position:499-741
               
               
               Cow position:chr11:47586354-47586587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):135, 41

               
               
               Conread position:499-743
               
               
               Cow position:chr11:62808656-62808892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):135, 36

               
               
               Conread position:499-743
               
               
               Cow position:chr11:63516823-63516580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):175, 41

               
               
               Conread position:499-744
               
               
               Cow position:chr11:58460107-58459883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:499-747
               
               
               Cow position:chr11:8105781-8105535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 78

               
               
               Conread position:499-747
               
               
               Cow position:chr11:47165145-47165385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):176, 41

               
               
               Conread position:499-747
               
               
               Cow position:chr11:62965552-62965801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):71, 38

               
               
               Conread position:499-754
               
               
               Cow position:chr11:41983461-41983701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:499-774
               
               
               Cow position:chr11:48901087-48901353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):267, 11

               
               
               Conread position:499-774
               
               
               Cow position:chr11:62016285-62016545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):194, 55

               
               
               Conread position:506-657
               
               
               Cow position:chr11:27661121-27660969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):45, 147

               
               
               Conread position:511-659
               
               
               Cow position:chr11:61298996-61299141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):108, 32

               
               
               Conread position:511-746
               
               
               Cow position:chr11:77241354-77241126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:511-747
               
               
               Cow position:chr11:75748418-75748187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):129, 26

               
               
               Conread position:511-776
               
               
               Cow position:chr11:49106041-49105781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):119, 25

               
               
               Conread position:512-752
               
               
               Cow position:chr11:21819458-21819697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):181, 26

               
               
               Conread position:512-777
               
               
               Cow position:chr11:25320039-25319773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):175, 28

               
               
               Conread position:512-784
               
               
               Cow position:chr11:71846363-71846635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):178, 25

               
               
               Conread position:513-689
               
               
               Cow position:chr11:17553363-17553532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):124, 24

               
               
               Conread position:513-754
               
               
               Cow position:chr11:8232585-8232819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:513-795
               
               
               Cow position:chr11:43914197-43913926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):129, 24

               
               
               Conread position:514-747
               
               
               Cow position:chr11:70382709-70382943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):118, 25

               
               
               Conread position:520-747
               
               
               Cow position:chr11:31885498-31885273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):105, 83

               
               
               Conread position:522-754
               
               
               Cow position:chr11:75355583-75355355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):147, 27

               
               
               Conread position:532-744
               
               
               Cow position:chr11:63520741-63520528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 71

               
               
               Conread position:534-754
               
               
               Cow position:chr11:74929750-74929525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):17, 65

               
               
               Conread position:536-718
               
               
               Cow position:chr11:5526606-5526793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):24, 67

               
               
               Conread position:536-808
               
               
               Cow position:chr11:81066621-81066891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):101, 61

               
               
               Conread position:538-795
               
               
               Cow position:chr11:32595430-32595170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):153, 64

               
               
               Conread position:539-754
               
               
               Cow position:chr11:81300649-81300867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):148, 63

               
               
               Conread position:541-747
               
               
               Cow position:chr11:27462432-27462632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):9, 51

               
               
               Conread position:545-785
               
               
               Cow position:chr11:41577059-41577292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:546-747
               
               
               Cow position:chr11:35276253-35276053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):145, 9

               
               
               Conread position:546-747
               
               
               Cow position:chr11:46473727-46473933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):78, 56

               
               
               Conread position:547-754
               
               
               Cow position:chr11:57111354-57111563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):97, 52

               
               
               Conread position:549-743
               
               
               Cow position:chr11:19508246-19508054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:549-756
               
               
               Cow position:chr11:84924144-84924356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:550-774
               
               
               Cow position:chr11:53719893-53719670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):137, 53

               
               
               Conread position:552-742
               
               
               Cow position:chr11:57724875-57725071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):78, 50

               
               
               Conread position:554-747
               
               
               Cow position:chr11:25165388-25165196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:559-754
               
               
               Cow position:chr11:84890809-84891007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):115, 44

               
               
               Conread position:560-747
               
               
               Cow position:chr11:71309588-71309776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):70, 31

               
               
               Conread position:561-785
               
               
               Cow position:chr11:40467179-40467411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):74, 42

               
               
               Conread position:566-762
               
               
               Cow position:chr11:10127690-10127880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):115, 12

               
               
               Conread position:571-778
               
               
               Cow position:chr11:34616198-34615988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:579-748
               
               
               Cow position:chr11:27722284-27722113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):80, 23

               
               
               Conread position:580-791
               
               
               Cow position:chr11:70304003-70303793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):57, 22

               
               
               Conread position:600-747
               
               
               Cow position:chr11:54134349-54134493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):71, 23
Show alignments to all cow chromosomes.
Conread position:	284-728
Cow position:	chr11:38874199-38874630 (view UCSC Genome Browser custom track)
Alignm length:	452
Alignm identity:	300
Alignm E-value:	6e-40
Alignm gaps (pig, cow):	197, 16
Conread position:	308-684
Cow position:	chr11:71492659-71493041 (view UCSC Genome Browser custom track)
Alignm length:	395
Alignm identity:	280
Alignm E-value:	0
Alignm gaps (pig, cow):	25, 147
Conread position:	308-754
Cow position:	chr11:30355254-30354812 (view UCSC Genome Browser custom track)
Alignm length:	465
Alignm identity:	310
Alignm E-value:	1e-35
Alignm gaps (pig, cow):	29, 87
Conread position:	309-743
Cow position:	chr11:11125869-11125420 (view UCSC Genome Browser custom track)
Alignm length:	457
Alignm identity:	327
Alignm E-value:	0
Alignm gaps (pig, cow):	26, 129
Conread position:	312-710
Cow position:	chr11:11558368-11557958 (view UCSC Genome Browser custom track)
Alignm length:	414
Alignm identity:	265
Alignm E-value:	8e-33
Alignm gaps (pig, cow):	39, 145
Conread position:	313-611
Cow position:	chr11:249306-249595 (view UCSC Genome Browser custom track)
Alignm length:	306
Alignm identity:	210
Alignm E-value:	2e-29
Alignm gaps (pig, cow):	58, 100
Conread position:	315-590
Cow position:	chr11:35536772-35536497 (view UCSC Genome Browser custom track)
Alignm length:	285
Alignm identity:	209
Alignm E-value:	6.99949e-42
Alignm gaps (pig, cow):	87, 43
Conread position:	315-747
Cow position:	chr11:30192375-30191922 (view UCSC Genome Browser custom track)
Alignm length:	459
Alignm identity:	313
Alignm E-value:	0
Alignm gaps (pig, cow):	48, 141
Conread position:	316-542
Cow position:	chr11:35669771-35669998 (view UCSC Genome Browser custom track)
Alignm length:	235
Alignm identity:	180
Alignm E-value:	6e-40
Alignm gaps (pig, cow):	78, 18
Conread position:	316-756
Cow position:	chr11:15632364-15632816 (view UCSC Genome Browser custom track)
Alignm length:	459
Alignm identity:	301
Alignm E-value:	2e-39
Alignm gaps (pig, cow):	55, 67
Conread position:	316-778
Cow position:	chr11:41272313-41271858 (view UCSC Genome Browser custom track)
Alignm length:	475
Alignm identity:	327
Alignm E-value:	0
Alignm gaps (pig, cow):	165, 16
Conread position:	317-538
Cow position:	chr11:897859-897630 (view UCSC Genome Browser custom track)
Alignm length:	232
Alignm identity:	168
Alignm E-value:	7e-31
Alignm gaps (pig, cow):	38, 76
Conread position:	317-624
Cow position:	chr11:21136989-21136688 (view UCSC Genome Browser custom track)
Alignm length:	315
Alignm identity:	210
Alignm E-value:	1e-24
Alignm gaps (pig, cow):	45, 65
Conread position:	317-744
Cow position:	chr11:17227455-17227884 (view UCSC Genome Browser custom track)
Alignm length:	443
Alignm identity:	317
Alignm E-value:	0
Alignm gaps (pig, cow):	19, 134
Conread position:	318-747
Cow position:	chr11:34113450-34113027 (view UCSC Genome Browser custom track)
Alignm length:	443
Alignm identity:	316
Alignm E-value:	0
Alignm gaps (pig, cow):	13, 43
Conread position:	318-754
Cow position:	chr11:16342054-16342496 (view UCSC Genome Browser custom track)
Alignm length:	456
Alignm identity:	310
Alignm E-value:	9.80909e-45
Alignm gaps (pig, cow):	170, 50
Conread position:	319-600
Cow position:	chr11:35212977-35213267 (view UCSC Genome Browser custom track)
Alignm length:	298
Alignm identity:	208
Alignm E-value:	6e-30
Alignm gaps (pig, cow):	15, 135
Conread position:	319-607
Cow position:	chr11:18785703-18785979 (view UCSC Genome Browser custom track)
Alignm length:	291
Alignm identity:	210
Alignm E-value:	2e-38
Alignm gaps (pig, cow):	76, 48
Conread position:	319-644
Cow position:	chr11:49057576-49057259 (view UCSC Genome Browser custom track)
Alignm length:	332
Alignm identity:	249
Alignm E-value:	0
Alignm gaps (pig, cow):	44, 76
Conread position:	319-774
Cow position:	chr11:10095536-10095067 (view UCSC Genome Browser custom track)
Alignm length:	482
Alignm identity:	328
Alignm E-value:	0
Alignm gaps (pig, cow):	44, 120