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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8058J07.5
        

               
Conread position:
               
274-748
               

               
Cow position:
               
chr27:14670679-14670194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
36, 179
               

               
Conread position:
               
306-743
               

               
Cow position:
               
chr27:19685973-19685533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
63, 35
               

               
Conread position:
               
314-747
               

               
Cow position:
               
chr27:15319224-15319637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
316-742
               

               
Cow position:
               
chr27:19387761-19388199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
21, 141
               

               
Conread position:
               
318-734
               

               
Cow position:
               
chr27:28018068-28018509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
13, 262
               

               
Conread position:
               
319-785
               

               
Cow position:
               
chr27:7412141-7412608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
49, 135
               

               
Conread position:
               
320-479
               

               
Cow position:
               
chr27:26400968-26400804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
42, 14
               

               
Conread position:
               
320-508
               

               
Cow position:
               
chr27:12284740-12284946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
10, 140
               

               
Conread position:
               
320-519
               

               
Cow position:
               
chr27:6162655-6162447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
43, 87
               

               
Conread position:
               
320-523
               

               
Cow position:
               
chr27:19452748-19452969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 17
               

               
Conread position:
               
320-549
               

               
Cow position:
               
chr27:20897272-20897032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
48, 134
               

               
Conread position:
               
320-581
               

               
Cow position:
               
chr27:11561523-11561796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
50, 34
               

               
Conread position:
               
320-604
               

               
Cow position:
               
chr27:20812672-20812954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
161, 38
               

               
Conread position:
               
320-628
               

               
Cow position:
               
chr27:26112170-26111843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
43, 138
               

               
Conread position:
               
320-655
               

               
Cow position:
               
chr27:23594067-23594409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 138
               

               
Conread position:
               
320-657
               

               
Cow position:
               
chr27:22560078-22559726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 137
               

               
Conread position:
               
320-663
               

               
Cow position:
               
chr27:29504882-29504546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
43, 65
               

               
Conread position:
               
320-719
               

               
Cow position:
               
chr27:14343688-14343310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 62
               

               
Conread position:
               
320-727
               

               
Cow position:
               
chr27:27438760-27438339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
38, 138
               

               
Conread position:
               
320-731
               

               
Cow position:
               
chr27:23632356-23632771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 42
               

               
Conread position:
               
320-733
               

               
Cow position:
               
chr27:15409277-15408872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
43, 91
               

               
Conread position:
               
320-743
               

               
Cow position:
               
chr27:8962493-8962088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
38, 100
               

               
Conread position:
               
320-744
               

               
Cow position:
               
chr27:30890049-30890469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 87
               

               
Conread position:
               
320-747
               

               
Cow position:
               
chr27:2957164-2957593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 100
               

               
Conread position:
               
320-747
               

               
Cow position:
               
chr27:8430672-8430253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
156, 45
               

               
Conread position:
               
320-747
               

               
Cow position:
               
chr27:25998472-25998890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
12, 77
               

               
Conread position:
               
320-754
               

               
Cow position:
               
chr27:17472561-17473005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
15, 135
               

               
Conread position:
               
320-756
               

               
Cow position:
               
chr27:11435579-11435135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
43, 137
               

               
Conread position:
               
320-760
               

               
Cow position:
               
chr27:13005615-13006034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
16, 48
               

               
Conread position:
               
320-762
               

               
Cow position:
               
chr27:23128214-23128655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
41, 16
               

               
Conread position:
               
320-774
               

               
Cow position:
               
chr27:20828956-20828494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
40, 110
               

               
Conread position:
               
320-778
               

               
Cow position:
               
chr27:7935412-7934945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
27, 138
               

               
Conread position:
               
321-534
               

               
Cow position:
               
chr27:18435381-18435155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
49, 131
               

               
Conread position:
               
321-593
               

               
Cow position:
               
chr27:19932814-19933097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 138
               

               
Conread position:
               
321-628
               

               
Cow position:
               
chr27:20514573-20514887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
13, 135
               

               
Conread position:
               
321-691
               

               
Cow position:
               
chr27:16965323-16965717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
13, 137
               

               
Conread position:
               
321-693
               

               
Cow position:
               
chr27:3306535-3306900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
62, 44
               

               
Conread position:
               
321-743
               

               
Cow position:
               
chr27:8630124-8629693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
50, 137
               

               
Conread position:
               
321-747
               

               
Cow position:
               
chr27:10992123-10992539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 46
               

               
Conread position:
               
321-747
               

               
Cow position:
               
chr27:26218477-26218884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
146, 37
               

               
Conread position:
               
321-747
               

               
Cow position:
               
chr27:28190442-28190032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
42, 79
               

               
Conread position:
               
321-754
               

               
Cow position:
               
chr27:19544152-19543717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
162, 46
               

               
Conread position:
               
321-810
               

               
Cow position:
               
chr27:10979609-10980113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 120
               

               
Conread position:
               
322-470
               

               
Cow position:
               
chr27:20561338-20561490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 86
               

               
Conread position:
               
322-601
               

               
Cow position:
               
chr27:212701-213004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
41, 138
               

               
Conread position:
               
322-735
               

               
Cow position:
               
chr27:26425972-26426382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
6, 53
               

               
Conread position:
               
323-473
               

               
Cow position:
               
chr27:27529063-27528909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
40, 126
               

               
Conread position:
               
323-514
               

               
Cow position:
               
chr27:5463008-5462820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
323-747
               

               
Cow position:
               
chr27:28206555-28206983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
48, 130
               

               
Conread position:
               
324-473
               

               
Cow position:
               
chr27:23495943-23495797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
63, 34
               

               
Conread position:
               
324-536
               

               
Cow position:
               
chr27:29388424-29388652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 131
               

               
Conread position:
               
324-549
               

               
Cow position:
               
chr27:16512415-16512179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
36, 61
               

               
Conread position:
               
324-574
               

               
Cow position:
               
chr27:26437369-26437105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
10, 124
               

               
Conread position:
               
324-580
               

               
Cow position:
               
chr27:31248854-31248598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
43, 121
               

               
Conread position:
               
324-597
               

               
Cow position:
               
chr27:14269579-14269306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
10, 92
               

               
Conread position:
               
324-603
               

               
Cow position:
               
chr27:13940799-13940517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
10, 57
               

               
Conread position:
               
324-637
               

               
Cow position:
               
chr27:6924833-6925164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
10, 137
               

               
Conread position:
               
324-656
               

               
Cow position:
               
chr27:28896629-28896969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 118
               

               
Conread position:
               
324-685
               

               
Cow position:
               
chr27:426722-427092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
49, 130
               

               
Conread position:
               
324-724
               

               
Cow position:
               
chr27:30872306-30871897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
13, 116
               

               
Conread position:
               
324-731
               

               
Cow position:
               
chr27:4944754-4944357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 93
               

               
Conread position:
               
324-746
               

               
Cow position:
               
chr27:27020344-27019916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 113
               

               
Conread position:
               
324-746
               

               
Cow position:
               
chr27:30868999-30868554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 142
               

               
Conread position:
               
324-747
               

               
Cow position:
               
chr27:1353332-1353770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 21
               

               
Conread position:
               
324-747
               

               
Cow position:
               
chr27:8353247-8353662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
29, 81
               

               
Conread position:
               
324-747
               

               
Cow position:
               
chr27:20553024-20552584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
39, 296
               

               
Conread position:
               
324-752
               

               
Cow position:
               
chr27:13875484-13875926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
10, 122
               

               
Conread position:
               
324-753
               

               
Cow position:
               
chr27:20766182-20765772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
111, 43
               

               
Conread position:
               
324-754
               

               
Cow position:
               
chr27:30914758-30915194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
11, 118
               

               
Conread position:
               
324-776
               

               
Cow position:
               
chr27:15925099-15925550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
12, 132
               

               
Conread position:
               
324-777
               

               
Cow position:
               
chr27:14937658-14937214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 32
               

               
Conread position:
               
324-785
               

               
Cow position:
               
chr27:24446385-24445931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
46, 16
               

               
Conread position:
               
325-467
               

               
Cow position:
               
chr27:1184420-1184272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 126
               

               
Conread position:
               
325-479
               

               
Cow position:
               
chr27:21951227-21951061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 132
               

               
Conread position:
               
325-601
               

               
Cow position:
               
chr27:17646396-17646127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
158, 36
               

               
Conread position:
               
325-747
               

               
Cow position:
               
chr27:13251784-13252195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 27
               

               
Conread position:
               
325-747
               

               
Cow position:
               
chr27:13411615-13411171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 126
               

               
Conread position:
               
325-747
               

               
Cow position:
               
chr27:27856092-27856519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
46, 29
               

               
Conread position:
               
325-752
               

               
Cow position:
               
chr27:22547635-22547214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
33, 90
               

               
Conread position:
               
325-754
               

               
Cow position:
               
chr27:22330905-22330477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 71
               

               
Conread position:
               
325-756
               

               
Cow position:
               
chr27:15453966-15454404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 133
               

               
Conread position:
               
325-758
               

               
Cow position:
               
chr27:17397698-17397249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 127
               

               
Conread position:
               
325-795
               

               
Cow position:
               
chr27:22035618-22035139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 90
               

               
Conread position:
               
326-500
               

               
Cow position:
               
chr27:25790057-25790236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 123
               

               
Conread position:
               
326-534
               

               
Cow position:
               
chr27:6241438-6241214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
34, 26
               

               
Conread position:
               
326-538
               

               
Cow position:
               
chr27:6106461-6106682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 126
               

               
Conread position:
               
326-541
               

               
Cow position:
               
chr27:22245396-22245611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
91, 11
               

               
Conread position:
               
326-600
               

               
Cow position:
               
chr27:18882410-18882694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
8, 108
               

               
Conread position:
               
326-679
               

               
Cow position:
               
chr27:16103565-16103921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
37, 130
               

               
Conread position:
               
326-742
               

               
Cow position:
               
chr27:22171056-22171479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 127
               

               
Conread position:
               
326-743
               

               
Cow position:
               
chr27:22220304-22220735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
42, 132
               

               
Conread position:
               
326-743
               

               
Cow position:
               
chr27:27389273-27388847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
45, 135
               

               
Conread position:
               
326-744
               

               
Cow position:
               
chr27:16705007-16705429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 129
               

               
Conread position:
               
326-744
               

               
Cow position:
               
chr27:26807794-26807381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 28
               

               
Conread position:
               
326-747
               

               
Cow position:
               
chr27:20283398-20283817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
45, 71
               

               
Conread position:
               
326-747
               

               
Cow position:
               
chr27:22439891-22440325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
33, 61
               

               
Conread position:
               
326-747
               

               
Cow position:
               
chr27:26984108-26984527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
45, 122
               

               
Conread position:
               
326-785
               

               
Cow position:
               
chr27:26643457-26643898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
148, 36
               

               
Conread position:
               
327-542
               

               
Cow position:
               
chr27:31386875-31386644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
34, 127
               

               
Conread position:
               
327-548
               

               
Cow position:
               
chr27:8790987-8790750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
43, 129
               

               
Conread position:
               
327-634
               

               
Cow position:
               
chr27:20749247-20748935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 81
               

               
Conread position:
               
327-657
               

               
Cow position:
               
chr27:4858863-4858551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
327-743
               

               
Cow position:
               
chr27:27554924-27554505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
36, 17
               

               
Conread position:
               
327-747
               

               
Cow position:
               
chr27:26509400-26508972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
327-750
               

               
Cow position:
               
chr27:4390501-4390066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 12
               

               
Conread position:
               
327-754
               

               
Cow position:
               
chr27:2592292-2592734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 133
               

               
Conread position:
               
327-754
               

               
Cow position:
               
chr27:15669019-15668574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 131
               

               
Conread position:
               
327-754
               

               
Cow position:
               
chr27:25809761-25809330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
45, 131
               

               
Conread position:
               
328-475
               

               
Cow position:
               
chr27:15434089-15434238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
62, 30
               

               
Conread position:
               
328-479
               

               
Cow position:
               
chr27:22497784-22497939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
33, 68
               

               
Conread position:
               
328-513
               

               
Cow position:
               
chr27:16246564-16246750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
328-631
               

               
Cow position:
               
chr27:22225813-22225526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
155, 42
               

               
Conread position:
               
328-648
               

               
Cow position:
               
chr27:19508768-19509102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
43, 128
               

               
Conread position:
               
328-676
               

               
Cow position:
               
chr27:17995185-17994828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
33, 108
               

               
Conread position:
               
328-724
               

               
Cow position:
               
chr27:24477182-24477579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
29, 68
               

               
Conread position:
               
328-737
               

               
Cow position:
               
chr27:18543744-18544173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
29, 228
               

               
Conread position:
               
328-747
               

               
Cow position:
               
chr27:4664274-4664655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
86, 35
               

               
Conread position:
               
328-747
               

               
Cow position:
               
chr27:15315279-15315679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
34, 125
               

               
Conread position:
               
328-747
               

               
Cow position:
               
chr27:20354355-20354765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 125
               

               
Conread position:
               
328-747
               

               
Cow position:
               
chr27:29039165-29038755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
148, 64
               

               
Conread position:
               
328-774
               

               
Cow position:
               
chr27:28922139-28921683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 130
               

               
Conread position:
               
328-778
               

               
Cow position:
               
chr27:12515950-12516417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
35, 112
               

               
Conread position:
               
329-467
               

               
Cow position:
               
chr27:7847483-7847623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
65, 29
               

               
Conread position:
               
329-472
               

               
Cow position:
               
chr27:25382380-25382241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
329-515
               

               
Cow position:
               
chr27:22212932-22213108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
329-593
               

               
Cow position:
               
chr27:1637169-1636903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
28, 67
               

               
Conread position:
               
329-624
               

               
Cow position:
               
chr27:28260762-28260477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
157, 26
               

               
Conread position:
               
329-747
               

               
Cow position:
               
chr27:18507402-18507817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
31, 131
               

               
Conread position:
               
329-747
               

               
Cow position:
               
chr27:28002047-28001633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 68
               

               
Conread position:
               
329-747
               

               
Cow position:
               
chr27:31373215-31372794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
29, 129
               

               
Conread position:
               
329-753
               

               
Cow position:
               
chr27:30407290-30406840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
34, 115
               

               
Conread position:
               
329-764
               

               
Cow position:
               
chr27:4835842-4835405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
12, 60
               

               
Conread position:
               
329-785
               

               
Cow position:
               
chr27:26441272-26440833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
82, 38
               

               
Conread position:
               
330-657
               

               
Cow position:
               
chr27:22386646-22386965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
330-743
               

               
Cow position:
               
chr27:21978385-21977956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
33, 112
               

               
Conread position:
               
330-754
               

               
Cow position:
               
chr27:15865987-15866416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
77, 28
               

               
Conread position:
               
330-772
               

               
Cow position:
               
chr27:18558116-18558575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 110
               

               
Conread position:
               
331-737
               

               
Cow position:
               
chr27:27050127-27049737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
150, 34
               

               
Conread position:
               
332-506
               

               
Cow position:
               
chr27:17102660-17102836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
31, 120
               

               
Conread position:
               
332-599
               

               
Cow position:
               
chr27:29593868-29593590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
28, 128
               

               
Conread position:
               
332-747
               

               
Cow position:
               
chr27:16284249-16284658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
39, 51
               

               
Conread position:
               
333-747
               

               
Cow position:
               
chr27:299613-299198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
38, 116
               

               
Conread position:
               
333-764
               

               
Cow position:
               
chr27:27632832-27632407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 116
               

               
Conread position:
               
333-766
               

               
Cow position:
               
chr27:12596543-12596965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 117
               

               
Conread position:
               
335-734
               

               
Cow position:
               
chr27:6453990-6454387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
32, 46
               

               
Conread position:
               
335-785
               

               
Cow position:
               
chr27:26428365-26427903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 99
               

               
Conread position:
               
340-743
               

               
Cow position:
               
chr27:6550227-6550632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 120
               

               
Conread position:
               
343-655
               

               
Cow position:
               
chr27:26188598-26188915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
20, 115
               

               
Conread position:
               
343-747
               

               
Cow position:
               
chr27:23554558-23554134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
19, 98
               

               
Conread position:
               
344-753
               

               
Cow position:
               
chr27:19660700-19661134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
14, 120
               

               
Conread position:
               
345-596
               

               
Cow position:
               
chr27:14303518-14303769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
18, 108
               

               
Conread position:
               
345-717
               

               
Cow position:
               
chr27:23890706-23891093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
23, 115
               

               
Conread position:
               
346-744
               

               
Cow position:
               
chr27:21393719-21393322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 21
               

               
Conread position:
               
346-785
               

               
Cow position:
               
chr27:1768843-1768410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 107
               

               
Conread position:
               
347-699
               

               
Cow position:
               
chr27:8168646-8168293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
16, 104
               

               
Conread position:
               
355-747
               

               
Cow position:
               
chr27:23483019-23483408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
16, 91
               

               
Conread position:
               
357-611
               

               
Cow position:
               
chr27:15865401-15865660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
44, 89
               

               
Conread position:
               
357-754
               

               
Cow position:
               
chr27:6499849-6500257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 95
               

               
Conread position:
               
360-614
               

               
Cow position:
               
chr27:23859957-23860221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
37, 88
               

               
Conread position:
               
360-685
               

               
Cow position:
               
chr27:26490111-26489782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
41, 68
               

               
Conread position:
               
360-743
               

               
Cow position:
               
chr27:28518087-28518467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
30, 94
               

               
Conread position:
               
360-744
               

               
Cow position:
               
chr27:28932008-28931605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 75
               

               
Conread position:
               
360-747
               

               
Cow position:
               
chr27:30764827-30765217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 49
               

               
Conread position:
               
360-762
               

               
Cow position:
               
chr27:6541429-6541825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
36, 86
               

               
Conread position:
               
361-723
               

               
Cow position:
               
chr27:19896558-19896918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
43, 67
               

               
Conread position:
               
362-679
               

               
Cow position:
               
chr27:27442364-27442053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
41, 66
               

               
Conread position:
               
364-795
               

               
Cow position:
               
chr27:24227998-24227559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
37, 77
               

               
Conread position:
               
365-743
               

               
Cow position:
               
chr27:24331525-24331907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
119, 72
               

               
Conread position:
               
366-592
               

               
Cow position:
               
chr27:10653493-10653717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
70, 20
               

               
Conread position:
               
368-747
               

               
Cow position:
               
chr27:22418962-22418579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 78
               

               
Conread position:
               
376-747
               

               
Cow position:
               
chr27:26238834-26239209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
379-690
               

               
Cow position:
               
chr27:30261074-30260768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
105, 65
               

               
Conread position:
               
379-753
               

               
Cow position:
               
chr27:536283-536648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
104, 34
               

               
Conread position:
               
382-744
               

               
Cow position:
               
chr27:6073752-6074099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 65
               

               
Conread position:
               
382-747
               

               
Cow position:
               
chr27:815180-815550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
56, 19
               

               
Conread position:
               
382-755
               

               
Cow position:
               
chr27:22454955-22454585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 62
               

               
Conread position:
               
384-747
               

               
Cow position:
               
chr27:4672834-4673206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 62
               

               
Conread position:
               
386-710
               

               
Cow position:
               
chr27:7731436-7731100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
31, 64
               

               
Conread position:
               
389-593
               

               
Cow position:
               
chr27:15343449-15343248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
389-624
               

               
Cow position:
               
chr27:1558820-1558596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
17, 61
               

               
Conread position:
               
389-628
               

               
Cow position:
               
chr27:20085385-20085630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
55, 43
               

               
Conread position:
               
389-628
               

               
Cow position:
               
chr27:20336930-20337178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
101, 54
               

               
Conread position:
               
389-726
               

               
Cow position:
               
chr27:27460743-27460408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 56
               

               
Conread position:
               
389-755
               

               
Cow position:
               
chr27:27641182-27640798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 37
               

               
Conread position:
               
390-542
               

               
Cow position:
               
chr27:30908501-30908658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 55
               

               
Conread position:
               
390-593
               

               
Cow position:
               
chr27:18923003-18922798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
90, 59
               

               
Conread position:
               
390-596
               

               
Cow position:
               
chr27:22423344-22423545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
16, 55
               

               
Conread position:
               
390-613
               

               
Cow position:
               
chr27:6302638-6302410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
85, 54
               

               
Conread position:
               
390-613
               

               
Cow position:
               
chr27:20584624-20584402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
87, 38
               

               
Conread position:
               
390-636
               

               
Cow position:
               
chr27:15215056-15215307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
34, 57
               

               
Conread position:
               
390-647
               

               
Cow position:
               
chr27:15378644-15378393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
90, 32
               

               
Conread position:
               
390-679
               

               
Cow position:
               
chr27:24371072-24371348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
86, 53
               

               
Conread position:
               
390-722
               

               
Cow position:
               
chr27:27270714-27270377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
21, 55
               

               
Conread position:
               
390-723
               

               
Cow position:
               
chr27:15643004-15643337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 54
               

               
Conread position:
               
390-724
               

               
Cow position:
               
chr27:1291021-1290702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
390-743
               

               
Cow position:
               
chr27:22723865-22723525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
17, 57
               

               
Conread position:
               
390-747
               

               
Cow position:
               
chr27:4386232-4385881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 54
               

               
Conread position:
               
390-747
               

               
Cow position:
               
chr27:20795622-20795969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
85, 54
               

               
Conread position:
               
390-747
               

               
Cow position:
               
chr27:23882538-23882189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
94, 54
               

               
Conread position:
               
390-747
               

               
Cow position:
               
chr27:30988627-30988984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
90, 53
               

               
Conread position:
               
390-754
               

               
Cow position:
               
chr27:25276971-25277329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 55
               

               
Conread position:
               
390-754
               

               
Cow position:
               
chr27:30359236-30359588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 54
               

               
Conread position:
               
391-585
               

               
Cow position:
               
chr27:25151924-25152106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
95, 53
               

               
Conread position:
               
391-600
               

               
Cow position:
               
chr27:17918483-17918276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
88, 53
               

               
Conread position:
               
391-636
               

               
Cow position:
               
chr27:16088635-16088883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
93, 37
               

               
Conread position:
               
391-743
               

               
Cow position:
               
chr27:20641504-20641165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 37
               

               
Conread position:
               
391-744
               

               
Cow position:
               
chr27:27039007-27038661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 53
               

               
Conread position:
               
392-544
               

               
Cow position:
               
chr27:29319243-29319399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
92, 31
               

               
Conread position:
               
392-680
               

               
Cow position:
               
chr27:26920081-26919784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
392-743
               

               
Cow position:
               
chr27:22603017-22603344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
238, 52
               

               
Conread position:
               
392-747
               

               
Cow position:
               
chr27:8942858-8942498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
94, 54
               

               
Conread position:
               
392-756
               

               
Cow position:
               
chr27:19717746-19718118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
81, 52
               

               
Conread position:
               
393-714
               

               
Cow position:
               
chr27:28271318-28270994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
26, 34
               

               
Conread position:
               
393-734
               

               
Cow position:
               
chr27:9169806-9169472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 29
               

               
Conread position:
               
393-739
               

               
Cow position:
               
chr27:19546678-19546325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 16
               

               
Conread position:
               
393-741
               

               
Cow position:
               
chr27:20553563-20553896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
8, 54
               

               
Conread position:
               
393-747
               

               
Cow position:
               
chr27:24738966-24738616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
70, 17
               

               
Conread position:
               
394-632
               

               
Cow position:
               
chr27:4155832-4156072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
89, 32
               

               
Conread position:
               
394-636
               

               
Cow position:
               
chr27:20247972-20247733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
90, 154
               

               
Conread position:
               
394-747
               

               
Cow position:
               
chr27:25411675-25411334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
187, 16
               

               
Conread position:
               
395-688
               

               
Cow position:
               
chr27:17331337-17331625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
80, 33
               

               
Conread position:
               
396-632
               

               
Cow position:
               
chr27:31017990-31017764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
93, 48
               

               
Conread position:
               
398-747
               

               
Cow position:
               
chr27:12278406-12278087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
86, 12
               

               
Conread position:
               
398-778
               

               
Cow position:
               
chr27:26581599-26581228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
78, 48
               

               
Conread position:
               
399-747
               

               
Cow position:
               
chr27:26413416-26413070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
21, 28
               

               
Conread position:
               
400-658
               

               
Cow position:
               
chr27:8263499-8263238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 45
               

               
Conread position:
               
400-753
               

               
Cow position:
               
chr27:21138670-21139013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
81, 49
               

               
Conread position:
               
400-754
               

               
Cow position:
               
chr27:21453255-21452877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
81, 46
               

               
Conread position:
               
402-734
               

               
Cow position:
               
chr27:12246495-12246831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 42
               

               
Conread position:
               
403-747
               

               
Cow position:
               
chr27:11416294-11416626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
25, 44
               

               
Conread position:
               
403-752
               

               
Cow position:
               
chr27:19648100-19647750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
80, 47
               

               
Conread position:
               
405-744
               

               
Cow position:
               
chr27:20037270-20036946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 32
               

               
Conread position:
               
406-676
               

               
Cow position:
               
chr27:28245648-28245915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
69, 38
               

               
Conread position:
               
412-707
               

               
Cow position:
               
chr27:1122883-1123180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
103, 32
               

               
Conread position:
               
412-747
               

               
Cow position:
               
chr27:26150869-26151205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
63, 32
               

               
Conread position:
               
412-747
               

               
Cow position:
               
chr27:30354493-30354158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 32
               

               
Conread position:
               
413-663
               

               
Cow position:
               
chr27:20497058-20497315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
413-747
               

               
Cow position:
               
chr27:4813033-4812691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
15, 33
               

               
Conread position:
               
413-747
               

               
Cow position:
               
chr27:18593125-18593456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
416-693
               

               
Cow position:
               
chr27:715357-715634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
68, 10
               

               
Conread position:
               
417-747
               

               
Cow position:
               
chr27:1498171-1498499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
58, 124
               

               
Conread position:
               
428-747
               

               
Cow position:
               
chr27:23472125-23472441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
8, 17
               

               
Conread position:
               
430-741
               

               
Cow position:
               
chr27:1058806-1058500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
58, 12
               

               
Conread position:
               
430-753
               

               
Cow position:
               
chr27:4806032-4805717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
44, 14
               

               
Conread position:
               
444-642
               

               
Cow position:
               
chr27:26135029-26135219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
444-821
               

               
Cow position:
               
chr27:706835-707203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 96
               

               
Conread position:
               
448-747
               

               
Cow position:
               
chr27:25379874-25380176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 103
               

               
Conread position:
               
450-747
               

               
Cow position:
               
chr27:30362142-30362428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
240, 33
               

               
Conread position:
               
450-754
               

               
Cow position:
               
chr27:12429295-12429601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
51, 36
               

               
Conread position:
               
450-778
               

               
Cow position:
               
chr27:9090902-9090583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
240, 51
               

               
Conread position:
               
475-734
               

               
Cow position:
               
chr27:11412648-11412893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
165, 9
               

               
Conread position:
               
475-754
               

               
Cow position:
               
chr27:23070439-23070167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
216, 9
               

               
Conread position:
               
477-636
               

               
Cow position:
               
chr27:18491761-18491921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
59, 122
               

               
Conread position:
               
477-747
               

               
Cow position:
               
chr27:21569919-21569658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
152, 62
               

               
Conread position:
               
481-747
               

               
Cow position:
               
chr27:6522969-6523231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
135, 56
               

               
Conread position:
               
483-744
               

               
Cow position:
               
chr27:24999813-24999552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
159, 54
               

               
Conread position:
               
483-747
               

               
Cow position:
               
chr27:26380245-26379993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
154, 53
               

               
Conread position:
               
486-689
               

               
Cow position:
               
chr27:7538147-7537949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
143, 17
               

               
Conread position:
               
486-733
               

               
Cow position:
               
chr27:13841299-13841548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 59
               

               
Conread position:
               
486-743
               

               
Cow position:
               
chr27:25471069-25471321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
201, 33
               

               
Conread position:
               
486-744
               

               
Cow position:
               
chr27:11536175-11535914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
142, 65
               

               
Conread position:
               
486-747
               

               
Cow position:
               
chr27:27040532-27040793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
142, 54
               

               
Conread position:
               
486-747
               

               
Cow position:
               
chr27:29283478-29283223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
147, 49
               

               
Conread position:
               
486-747
               

               
Cow position:
               
chr27:30550925-30551181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
486-754
               

               
Cow position:
               
chr27:732505-732763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
146, 11
               

               
Conread position:
               
486-776
               

               
Cow position:
               
chr27:13197835-13198133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
53, 127
               

               
Conread position:
               
487-636
               

               
Cow position:
               
chr27:26979781-26979634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
487-676
               

               
Cow position:
               
chr27:6350909-6350715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
136, 49
               

               
Conread position:
               
490-657
               

               
Cow position:
               
chr27:20570053-20570217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 50
               

               
Conread position:
               
490-744
               

               
Cow position:
               
chr27:14902719-14902466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
74, 49
               

               
Conread position:
               
491-663
               

               
Cow position:
               
chr27:29236513-29236682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
498-740
               

               
Cow position:
               
chr27:27259556-27259787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
137, 42
               

               
Conread position:
               
498-744
               

               
Cow position:
               
chr27:25790746-25790986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
134, 38
               

               
Conread position:
               
499-708
               

               
Cow position:
               
chr27:4011622-4011820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
131, 36
               

               
Conread position:
               
499-743
               

               
Cow position:
               
chr27:31147726-31147492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
131, 38
               

               
Conread position:
               
499-746
               

               
Cow position:
               
chr27:27141545-27141778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
499-747
               

               
Cow position:
               
chr27:1183941-1183691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
52, 101
               

               
Conread position:
               
499-747
               

               
Cow position:
               
chr27:16237852-16238075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
499-753
               

               
Cow position:
               
chr27:28038396-28038146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
191, 26
               

               
Conread position:
               
500-744
               

               
Cow position:
               
chr27:30670684-30670920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
132, 44
               

               
Conread position:
               
500-747
               

               
Cow position:
               
chr27:29250824-29251065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
189, 40
               

               
Conread position:
               
503-657
               

               
Cow position:
               
chr27:4482909-4482762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
137, 33
               

               
Conread position:
               
503-689
               

               
Cow position:
               
chr27:10395312-10395134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
125, 21
               

               
Conread position:
               
503-754
               

               
Cow position:
               
chr27:26398311-26398066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
194, 34
               

               
Conread position:
               
505-629
               

               
Cow position:
               
chr27:10350147-10350029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
507-639
               

               
Cow position:
               
chr27:14229612-14229752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
36, 133
               

               
Conread position:
               
511-747
               

               
Cow position:
               
chr27:794741-794969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
512-752
               

               
Cow position:
               
chr27:16871960-16871725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
521-769
               

               
Cow position:
               
chr27:20591945-20592189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
117, 11
               

               
Conread position:
               
534-754
               

               
Cow position:
               
chr27:6037098-6037315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
68, 20
               

               
Conread position:
               
536-744
               

               
Cow position:
               
chr27:27550767-27550565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
149, 62
               

               
Conread position:
               
538-762
               

               
Cow position:
               
chr27:11815781-11815559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
538-778
               

               
Cow position:
               
chr27:13639017-13638774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
97, 64
               

               
Conread position:
               
539-746
               

               
Cow position:
               
chr27:26224295-26224084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
98, 63
               

               
Conread position:
               
539-747
               

               
Cow position:
               
chr27:18215030-18215241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
91, 57
               

               
Conread position:
               
542-731
               

               
Cow position:
               
chr27:18434489-18434301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
98, 53
               

               
Conread position:
               
550-747
               

               
Cow position:
               
chr27:22498546-22498738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
143, 52
               

               
Conread position:
               
551-742
               

               
Cow position:
               
chr27:29399805-29399999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
89, 51
               

               
Conread position:
               
560-747
               

               
Cow position:
               
chr27:12231911-12231723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
87, 42
               

               
Conread position:
               
564-754
               

               
Cow position:
               
chr27:16619991-16620184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
123, 38
               

               
Conread position:
               
580-744
               

               
Cow position:
               
chr27:22179775-22179615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 22
               

               
Conread position:
               
591-747
               

               
Cow position:
               
chr27:26625153-26625310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 70
               
Show alignments to all cow chromosomes.