Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8060D19.3 |
| Conread position: | 294-786 |
| Cow position: | chr18:56013786-56014291 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 17 |
| Conread position: | 296-589 |
| Cow position: | chr18:51661551-51661852 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 120, 253 |
| Conread position: | 296-602 |
| Cow position: | chr18:16079880-16080197 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 113, 256 |
| Conread position: | 296-771 |
| Cow position: | chr18:37663555-37663992 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 328 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 138, 110 |
| Conread position: | 296-772 |
| Cow position: | chr18:19353570-19354051 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 175 |
| Conread position: | 296-772 |
| Cow position: | chr18:51461843-51461366 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 232 |
| Conread position: | 297-596 |
| Cow position: | chr18:51614440-51614134 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 121, 67 |
| Conread position: | 297-601 |
| Cow position: | chr18:51625092-51624787 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 118, 24 |
| Conread position: | 297-606 |
| Cow position: | chr18:33300524-33300822 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 124, 72 |
| Conread position: | 297-763 |
| Cow position: | chr18:54271691-54272159 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 55 |
| Conread position: | 298-433 |
| Cow position: | chr18:18528307-18528441 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 298-534 |
| Cow position: | chr18:15821618-15821378 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 138, 101 |
| Conread position: | 298-603 |
| Cow position: | chr18:42515410-42515702 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 76 |
| Conread position: | 298-732 |
| Cow position: | chr18:52652121-52652557 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 259 |
| Conread position: | 298-761 |
| Cow position: | chr18:23798861-23799321 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 30 |
| Conread position: | 298-771 |
| Cow position: | chr18:27837098-27836622 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 193 |
| Conread position: | 298-772 |
| Cow position: | chr18:14131605-14132074 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 170 |
| Conread position: | 298-772 |
| Cow position: | chr18:14417191-14417651 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 106 |
| Conread position: | 298-772 |
| Cow position: | chr18:16175404-16174936 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 30 |
| Conread position: | 298-772 |
| Cow position: | chr18:25352468-25352944 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 263 |
| Conread position: | 298-772 |
| Cow position: | chr18:28972673-28972202 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 30 |
| Conread position: | 298-772 |
| Cow position: | chr18:29865399-29864926 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 230 |
| Conread position: | 298-772 |
| Cow position: | chr18:51482081-51482538 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 127 |
| Conread position: | 299-601 |
| Cow position: | chr18:16276750-16276446 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 114, 29 |
| Conread position: | 301-580 |
| Cow position: | chr18:46884419-46884150 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 176, 120 |
| Conread position: | 301-599 |
| Cow position: | chr18:19405360-19405058 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 110, 97 |
| Conread position: | 301-599 |
| Cow position: | chr18:29074202-29074491 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 118, 105 |
| Conread position: | 301-683 |
| Cow position: | chr18:40479608-40479988 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 257 |
| Conread position: | 301-747 |
| Cow position: | chr18:54004957-54004516 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 160 |
| Conread position: | 301-761 |
| Cow position: | chr18:54022916-54022459 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 248 |
| Conread position: | 301-772 |
| Cow position: | chr18:16392867-16392429 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 322 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 117, 58 |
| Conread position: | 301-773 |
| Cow position: | chr18:46867686-46867229 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 127 |
| Conread position: | 302-751 |
| Cow position: | chr18:54170296-54169843 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 112 |
| Conread position: | 304-779 |
| Cow position: | chr18:37507175-37507653 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 225 |
| Conread position: | 305-772 |
| Cow position: | chr18:29238116-29238571 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 17 |
| Conread position: | 306-536 |
| Cow position: | chr18:32768970-32769212 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 306-772 |
| Cow position: | chr18:41839593-41839132 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 74 |
| Conread position: | 307-601 |
| Cow position: | chr18:15856442-15856739 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 38, 21 |
| Conread position: | 307-707 |
| Cow position: | chr18:11273896-11273495 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 151 |
| Conread position: | 307-722 |
| Cow position: | chr18:40345183-40344765 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 175 |
| Conread position: | 307-772 |
| Cow position: | chr18:51342907-51343367 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 89 |
| Conread position: | 307-773 |
| Cow position: | chr18:34043831-34044281 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 21 |
| Conread position: | 307-773 |
| Cow position: | chr18:38343071-38342619 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 307-773 |
| Cow position: | chr18:47742723-47743192 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 249 |
| Conread position: | 308-771 |
| Cow position: | chr18:33270164-33270591 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 105 |
| Conread position: | 311-601 |
| Cow position: | chr18:18495820-18495533 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 311-602 |
| Cow position: | chr18:8101200-8100894 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 74, 105 |
| Conread position: | 312-743 |
| Cow position: | chr18:6061582-6061161 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 14, 90 |
| Conread position: | 333-602 |
| Cow position: | chr18:16137603-16137331 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 99, 75 |
| Conread position: | 335-601 |
| Cow position: | chr18:46876083-46875822 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 86, 78 |
| Conread position: | 340-580 |
| Cow position: | chr18:18842367-18842119 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 81, 73 |
| Conread position: | 349-600 |
| Cow position: | chr18:18851640-18851891 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 31, 35 |
| Conread position: | 350-772 |
| Cow position: | chr18:27988446-27988870 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 208 |
| Conread position: | 362-772 |
| Cow position: | chr18:16089395-16089804 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 194 |
| Conread position: | 371-770 |
| Cow position: | chr18:36509898-36510299 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 186 |
| Conread position: | 382-772 |
| Cow position: | chr18:51694995-51695386 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 289 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 27, 173 |
| Conread position: | 401-602 |
| Cow position: | chr18:25921293-25921502 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 16, 156 |
| Conread position: | 403-779 |
| Cow position: | chr18:26245304-26244932 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 281 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 16, 148 |
| Conread position: | 421-721 |
| Cow position: | chr18:17672462-17672171 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 71, 13 |
| Conread position: | 433-725 |
| Cow position: | chr18:23442445-23442171 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 76, 54 |
| Conread position: | 433-754 |
| Cow position: | chr18:29046599-29046291 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 434-601 |
| Cow position: | chr18:16149874-16150040 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 29, 19 |
| Conread position: | 437-784 |
| Cow position: | chr18:19485503-19485839 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 246 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 43, 13 |
| Conread position: | 450-791 |
| Cow position: | chr18:35054508-35054831 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 41, 70 |
| Conread position: | 467-772 |
| Cow position: | chr18:56485263-56484963 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 203, 15 |
| Conread position: | 504-718 |
| Cow position: | chr18:37157800-37157595 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 166, 41 |
| Conread position: | 509-772 |
| Cow position: | chr18:5534444-5534693 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 128, 30 |
| Conread position: | 572-787 |
| Cow position: | chr18:24617614-24617831 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 99, 21 |
| Conread position: | 603-741 |
| Cow position: | chr18:4947461-4947607 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 35, 135 |
| Conread position: | 603-769 |
| Cow position: | chr18:35373258-35373084 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 134 |
| Conread position: | 604-779 |
| Cow position: | chr18:33752207-33752388 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 26, 131 |
| Conread position: | 607-772 |
| Cow position: | chr18:27538373-27538547 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 130 |
Show alignments to all cow chromosomes.