Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8060D19.3 |
| Conread position: | 290-658 |
| Cow position: | chr19:6713521-6713172 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 228, 123 |
| Conread position: | 294-785 |
| Cow position: | chr19:39667318-39666846 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 114 |
| Conread position: | 296-572 |
| Cow position: | chr19:135578-135302 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 67, 158 |
| Conread position: | 296-669 |
| Cow position: | chr19:33527325-33527695 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 255 |
| Conread position: | 296-717 |
| Cow position: | chr19:43144926-43145343 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 81, 71 |
| Conread position: | 296-761 |
| Cow position: | chr19:773814-774281 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 41 |
| Conread position: | 296-772 |
| Cow position: | chr19:7343281-7343756 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 255 |
| Conread position: | 296-772 |
| Cow position: | chr19:20105939-20106415 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 67 |
| Conread position: | 296-772 |
| Cow position: | chr19:28594765-28595225 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 330 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 126, 32 |
| Conread position: | 296-772 |
| Cow position: | chr19:52150472-52149993 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 168 |
| Conread position: | 297-601 |
| Cow position: | chr19:33653512-33653203 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 245 |
| Conread position: | 297-608 |
| Cow position: | chr19:3139147-3139475 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 232 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 115, 69 |
| Conread position: | 297-700 |
| Cow position: | chr19:35384399-35384003 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 34, 121 |
| Conread position: | 297-744 |
| Cow position: | chr19:256477-256923 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 111 |
| Conread position: | 297-772 |
| Cow position: | chr19:342455-342936 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 95 |
| Conread position: | 297-772 |
| Cow position: | chr19:1588023-1587549 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 118 |
| Conread position: | 297-772 |
| Cow position: | chr19:40851235-40850777 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 128 |
| Conread position: | 297-779 |
| Cow position: | chr19:9706947-9706480 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 119 |
| Conread position: | 297-780 |
| Cow position: | chr19:30756433-30756911 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 203 |
| Conread position: | 298-532 |
| Cow position: | chr19:25924549-25924786 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 47, 101 |
| Conread position: | 298-673 |
| Cow position: | chr19:7489567-7489939 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 279 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 115, 62 |
| Conread position: | 298-772 |
| Cow position: | chr19:173471-173948 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 235 |
| Conread position: | 298-772 |
| Cow position: | chr19:892407-891947 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 28 |
| Conread position: | 298-772 |
| Cow position: | chr19:4386829-4387290 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 150 |
| Conread position: | 298-772 |
| Cow position: | chr19:5730086-5730530 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 463, 118 |
| Conread position: | 298-772 |
| Cow position: | chr19:12774330-12774793 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 30 |
| Conread position: | 298-772 |
| Cow position: | chr19:28405486-28405030 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 81 |
| Conread position: | 298-772 |
| Cow position: | chr19:28580447-28579986 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 178 |
| Conread position: | 298-772 |
| Cow position: | chr19:33874641-33875100 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 189 |
| Conread position: | 298-772 |
| Cow position: | chr19:39184326-39183856 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 260 |
| Conread position: | 298-772 |
| Cow position: | chr19:39391724-39392198 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 261 |
| Conread position: | 298-772 |
| Cow position: | chr19:40816297-40815822 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 110 |
| Conread position: | 299-771 |
| Cow position: | chr19:376505-376038 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 341 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 122, 58 |
| Conread position: | 301-519 |
| Cow position: | chr19:3174033-3174262 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 301-601 |
| Cow position: | chr19:1489783-1489469 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 234 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 301-772 |
| Cow position: | chr19:39517-39986 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 207 |
| Conread position: | 301-772 |
| Cow position: | chr19:161912-161458 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 43 |
| Conread position: | 301-772 |
| Cow position: | chr19:438222-437750 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 235 |
| Conread position: | 301-772 |
| Cow position: | chr19:50723772-50724236 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 154 |
| Conread position: | 302-571 |
| Cow position: | chr19:33442386-33442118 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 105, 94 |
| Conread position: | 302-753 |
| Cow position: | chr19:788624-789064 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 39, 26 |
| Conread position: | 304-772 |
| Cow position: | chr19:5900289-5899820 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 27 |
| Conread position: | 305-489 |
| Cow position: | chr19:21339499-21339303 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 310-602 |
| Cow position: | chr19:29141166-29141465 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 310-772 |
| Cow position: | chr19:32210848-32210386 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 158 |
| Conread position: | 311-601 |
| Cow position: | chr19:44031608-44031903 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 106, 69 |
| Conread position: | 318-587 |
| Cow position: | chr19:52842790-52843062 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 104, 10 |
| Conread position: | 331-761 |
| Cow position: | chr19:40886475-40886065 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 293 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 49, 56 |
| Conread position: | 332-717 |
| Cow position: | chr19:10509239-10508858 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 267 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 79, 25 |
| Conread position: | 342-772 |
| Cow position: | chr19:205763-206197 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 220 |
| Conread position: | 371-772 |
| Cow position: | chr19:33942858-33943256 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 97 |
| Conread position: | 417-769 |
| Cow position: | chr19:264986-265340 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 263 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 20, 130 |
| Conread position: | 434-601 |
| Cow position: | chr19:25788786-25788621 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 57, 18 |
| Conread position: | 434-601 |
| Cow position: | chr19:40794882-40794716 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 434-772 |
| Cow position: | chr19:16319272-16318940 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 242 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 56, 109 |
| Conread position: | 441-773 |
| Cow position: | chr19:16128505-16128846 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 52, 29 |
| Conread position: | 442-602 |
| Cow position: | chr19:9552813-9552651 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 457-772 |
| Cow position: | chr19:166748-166439 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 32, 63 |
| Conread position: | 603-772 |
| Cow position: | chr19:1583762-1583941 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 15, 53 |
| Conread position: | 603-772 |
| Cow position: | chr19:2272602-2272427 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 35, 46 |
Show alignments to all cow chromosomes.