Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8060D19.3 |
| Conread position: | 292-599 |
| Cow position: | chr20:13663885-13663563 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 101, 254 |
| Conread position: | 296-534 |
| Cow position: | chr20:8216689-8216934 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 193 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 138, 28 |
| Conread position: | 296-538 |
| Cow position: | chr20:37581388-37581628 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 296-761 |
| Cow position: | chr20:19439088-19439554 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 255 |
| Conread position: | 296-771 |
| Cow position: | chr20:30429444-30429921 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 25 |
| Conread position: | 296-772 |
| Cow position: | chr20:823945-824417 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 41 |
| Conread position: | 297-506 |
| Cow position: | chr20:10839551-10839341 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 161, 107 |
| Conread position: | 297-510 |
| Cow position: | chr20:28479864-28480067 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 172, 12 |
| Conread position: | 297-600 |
| Cow position: | chr20:14869783-14869479 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 109 |
| Conread position: | 297-718 |
| Cow position: | chr20:27338384-27338793 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 58 |
| Conread position: | 297-741 |
| Cow position: | chr20:18314172-18313754 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 111 |
| Conread position: | 297-772 |
| Cow position: | chr20:9344142-9344601 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 225 |
| Conread position: | 297-785 |
| Cow position: | chr20:18323762-18323303 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 328 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 107, 129 |
| Conread position: | 298-534 |
| Cow position: | chr20:35125669-35125917 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 115, 50 |
| Conread position: | 298-569 |
| Cow position: | chr20:8366748-8366482 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 39 |
| Conread position: | 298-751 |
| Cow position: | chr20:12569697-12570131 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 147 |
| Conread position: | 298-771 |
| Cow position: | chr20:28564407-28563931 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 108 |
| Conread position: | 298-771 |
| Cow position: | chr20:30686748-30687234 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 261 |
| Conread position: | 298-772 |
| Cow position: | chr20:5536112-5536594 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 259 |
| Conread position: | 298-772 |
| Cow position: | chr20:13764079-13764545 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 29 |
| Conread position: | 298-772 |
| Cow position: | chr20:17660567-17660095 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 259 |
| Conread position: | 298-772 |
| Cow position: | chr20:21915806-21916287 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 264 |
| Conread position: | 298-772 |
| Cow position: | chr20:25849646-25849179 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 161 |
| Conread position: | 298-772 |
| Cow position: | chr20:27870379-27870858 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 86 |
| Conread position: | 298-773 |
| Cow position: | chr20:23800060-23800534 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 88 |
| Conread position: | 298-779 |
| Cow position: | chr20:13787234-13787696 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 314 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 39, 44 |
| Conread position: | 299-771 |
| Cow position: | chr20:15096707-15096246 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 335 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 140, 37 |
| Conread position: | 301-586 |
| Cow position: | chr20:13678868-13678573 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 117, 107 |
| Conread position: | 301-590 |
| Cow position: | chr20:5791517-5791801 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 131, 100 |
| Conread position: | 301-602 |
| Cow position: | chr20:22210226-22210523 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 28 |
| Conread position: | 301-761 |
| Cow position: | chr20:19355945-19356396 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 241 |
| Conread position: | 301-771 |
| Cow position: | chr20:13499288-13499756 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 234 |
| Conread position: | 301-772 |
| Cow position: | chr20:9546850-9547296 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 21 |
| Conread position: | 301-772 |
| Cow position: | chr20:15293168-15293630 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 83 |
| Conread position: | 301-772 |
| Cow position: | chr20:23468484-23468018 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 163 |
| Conread position: | 301-772 |
| Cow position: | chr20:29949696-29950175 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 61 |
| Conread position: | 301-773 |
| Cow position: | chr20:10854160-10853701 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 329 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 143, 107 |
| Conread position: | 302-611 |
| Cow position: | chr20:5229335-5229019 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 39, 26 |
| Conread position: | 303-574 |
| Cow position: | chr20:32349448-32349724 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 113, 93 |
| Conread position: | 303-772 |
| Cow position: | chr20:16178587-16178098 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 251 |
| Conread position: | 304-718 |
| Cow position: | chr20:18967681-18968086 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 117, 40 |
| Conread position: | 305-698 |
| Cow position: | chr20:9520956-9520562 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 109 |
| Conread position: | 310-594 |
| Cow position: | chr20:38917544-38917833 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 70, 86 |
| Conread position: | 312-771 |
| Cow position: | chr20:5466224-5466657 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 316 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 61, 102 |
| Conread position: | 312-772 |
| Cow position: | chr20:28162003-28162475 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 318-716 |
| Cow position: | chr20:32120530-32120933 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 95 |
| Conread position: | 318-772 |
| Cow position: | chr20:15066665-15067107 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 326 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 60, 26 |
| Conread position: | 331-771 |
| Cow position: | chr20:871799-871374 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 77 |
| Conread position: | 335-685 |
| Cow position: | chr20:19340852-19341195 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 255 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 99, 53 |
| Conread position: | 343-701 |
| Cow position: | chr20:20753572-20753224 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 59, 195 |
| Conread position: | 355-773 |
| Cow position: | chr20:21395152-21395562 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 197 |
| Conread position: | 356-772 |
| Cow position: | chr20:24615658-24615255 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 175 |
| Conread position: | 386-779 |
| Cow position: | chr20:12437158-12436764 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 86 |
| Conread position: | 399-786 |
| Cow position: | chr20:13769139-13769510 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 150 |
| Conread position: | 433-744 |
| Cow position: | chr20:22698315-22698599 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 236, 72 |
| Conread position: | 434-772 |
| Cow position: | chr20:26054381-26054040 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 56, 181 |
| Conread position: | 462-772 |
| Cow position: | chr20:41364289-41363991 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 30, 80 |
| Conread position: | 465-772 |
| Cow position: | chr20:8972829-8972528 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 25, 84 |
| Conread position: | 543-772 |
| Cow position: | chr20:35126090-35126312 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 141, 61 |
| Conread position: | 605-761 |
| Cow position: | chr20:21717900-21718063 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 605-772 |
| Cow position: | chr20:20441477-20441301 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 29, 130 |
| Conread position: | 605-779 |
| Cow position: | chr20:13678366-13678186 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 36, 129 |
| Conread position: | 607-772 |
| Cow position: | chr20:30386603-30386430 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 29, 129 |
| Conread position: | 620-772 |
| Cow position: | chr20:35018437-35018594 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 85 |
Show alignments to all cow chromosomes.