Cow genome map

Conread name: Ss1.1-Pig4-TMW8060D19.3

Conread position: 292-601
Cow position: chr22:8648624-8648312 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 216
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 49, 7

Conread position: 294-792
Cow position: chr22:45510428-45509943 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 330
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 39, 34

Conread position: 296-515
Cow position: chr22:19320129-19320359 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 118, 168

Conread position: 296-669
Cow position: chr22:7304540-7304172 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 270
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 78, 68

Conread position: 296-761
Cow position: chr22:538220-538687 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 32

Conread position: 296-768
Cow position: chr22:290587-290116 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 248

Conread position: 296-772
Cow position: chr22:694737-695203 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 118

Conread position: 296-772
Cow position: chr22:1879920-1880395 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 71

Conread position: 296-772
Cow position: chr22:20239726-20239248 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 168

Conread position: 296-772
Cow position: chr22:21195376-21194907 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 108

Conread position: 296-772
Cow position: chr22:27308661-27308187 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 162

Conread position: 296-772
Cow position: chr22:30677572-30677123 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 334
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 342, 119

Conread position: 296-772
Cow position: chr22:37268281-37268758 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 68

Conread position: 296-772
Cow position: chr22:46580604-46580127 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 173

Conread position: 296-773
Cow position: chr22:18028401-18028880 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 67

Conread position: 297-568
Cow position: chr22:36579162-36578877 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 202
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 100, 170

Conread position: 297-590
Cow position: chr22:2394873-2394572 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 204
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 76, 59

Conread position: 297-716
Cow position: chr22:6502019-6501609 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 34

Conread position: 297-729
Cow position: chr22:316625-317053 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 59

Conread position: 297-772
Cow position: chr22:326073-325584 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 87

Conread position: 297-772
Cow position: chr22:522278-521803 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 40

Conread position: 297-772
Cow position: chr22:1268644-1268162 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 259

Conread position: 297-772
Cow position: chr22:36184876-36185343 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 161

Conread position: 297-772
Cow position: chr22:44935086-44935553 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 171

Conread position: 297-773
Cow position: chr22:36270316-36270769 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 322
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 40, 113

Conread position: 297-786
Cow position: chr22:3305461-3304998 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 40

Conread position: 297-788
Cow position: chr22:13547655-13547171 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 330
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 124, 24

Conread position: 298-580
Cow position: chr22:6602116-6601838 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 110

Conread position: 298-602
Cow position: chr22:8120963-8120659 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 223
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 43, 39

Conread position: 298-761
Cow position: chr22:1519903-1519451 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 203

Conread position: 298-771
Cow position: chr22:42992292-42992765 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 173

Conread position: 298-772
Cow position: chr22:559590-559118 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 86

Conread position: 298-772
Cow position: chr22:18815248-18814774 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 170

Conread position: 298-772
Cow position: chr22:19142572-19142097 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 30

Conread position: 298-772
Cow position: chr22:31333930-31333458 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 260

Conread position: 298-772
Cow position: chr22:34169456-34169926 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 163

Conread position: 298-772
Cow position: chr22:37292547-37292087 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 73

Conread position: 298-779
Cow position: chr22:36860422-36859951 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 229

Conread position: 298-784
Cow position: chr22:3803304-3803783 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 32

Conread position: 299-772
Cow position: chr22:10908720-10908245 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 252

Conread position: 301-585
Cow position: chr22:96231-95952 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 202
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 149, 21

Conread position: 301-601
Cow position: chr22:283951-283669 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 203
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 38, 27

Conread position: 301-601
Cow position: chr22:38550512-38550812 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 26

Conread position: 301-602
Cow position: chr22:19536672-19536982 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 214
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 113, 55

Conread position: 301-772
Cow position: chr22:6332830-6333299 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 257

Conread position: 301-772
Cow position: chr22:12730567-12730103 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 107

Conread position: 301-772
Cow position: chr22:17327336-17326867 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 167

Conread position: 301-772
Cow position: chr22:21035269-21034799 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 105

Conread position: 301-772
Cow position: chr22:35906270-35905796 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 107

Conread position: 301-772
Cow position: chr22:39468398-39467927 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 63

Conread position: 301-772
Cow position: chr22:44397553-44398020 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 252

Conread position: 301-779
Cow position: chr22:33351800-33352259 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 72

Conread position: 301-779
Cow position: chr22:44492173-44492645 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 250

Conread position: 302-772
Cow position: chr22:24951676-24952148 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 249

Conread position: 303-601
Cow position: chr22:44606553-44606254 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 209
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 105, 128

Conread position: 304-515
Cow position: chr22:1323330-1323548 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 132, 104

Conread position: 304-772
Cow position: chr22:11803930-11803462 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 247

Conread position: 305-772
Cow position: chr22:15852540-15853013 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 102

Conread position: 306-769
Cow position: chr22:23801078-23800631 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 70

Conread position: 307-538
Cow position: chr22:15053838-15054066 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 166
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 73, 48

Conread position: 307-772
Cow position: chr22:3277233-3276766 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 157

Conread position: 307-772
Cow position: chr22:6021791-6022243 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 161

Conread position: 307-772
Cow position: chr22:13773659-13774107 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 67

Conread position: 310-599
Cow position: chr22:13576007-13575710 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 200
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 111, 103

Conread position: 311-580
Cow position: chr22:28867760-28867487 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 188
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 59, 105

Conread position: 312-743
Cow position: chr22:13673679-13673256 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 306
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 29, 89

Conread position: 312-772
Cow position: chr22:8737204-8736757 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 49

Conread position: 313-772
Cow position: chr22:46585433-46584978 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 157

Conread position: 328-772
Cow position: chr22:44368325-44367891 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 88

Conread position: 330-772
Cow position: chr22:44348706-44348275 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 73

Conread position: 331-601
Cow position: chr22:45582068-45582343 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 201
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 84, 35

Conread position: 331-772
Cow position: chr22:1281567-1281144 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 429, 32

Conread position: 332-711
Cow position: chr22:19243556-19243922 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 267
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 104, 14

Conread position: 333-578
Cow position: chr22:24536914-24537164 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 182
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 88, 64

Conread position: 333-748
Cow position: chr22:31118090-31117678 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 276
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 130, 34

Conread position: 335-493
Cow position: chr22:26536209-26536375 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 83, 73

Conread position: 382-772
Cow position: chr22:16202112-16202504 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 89

Conread position: 384-791
Cow position: chr22:35670462-35670054 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 126

Conread position: 400-772
Cow position: chr22:30128811-30129171 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 45

Conread position: 429-791
Cow position: chr22:296710-297057 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 263
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 60, 5

Conread position: 434-780
Cow position: chr22:15352141-15352471 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 255
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 37, 16

Conread position: 437-716
Cow position: chr22:44458209-44458483 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 216
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 12, 116

Conread position: 437-769
Cow position: chr22:41241488-41241807 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 230
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 52, 107

Conread position: 438-772
Cow position: chr22:21590683-21591013 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 115

Conread position: 438-772
Cow position: chr22:29011999-29011685 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 51

Conread position: 438-772
Cow position: chr22:46614567-46614894 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 240
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 53, 73

Conread position: 438-773
Cow position: chr22:44518370-44518050 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 249
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 15, 79

Conread position: 446-772
Cow position: chr22:30146506-30146820 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 97

Conread position: 450-771
Cow position: chr22:19585715-19585404 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 224
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 43, 75

Conread position: 454-598
Cow position: chr22:37134349-37134497 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 9, 96

Conread position: 454-769
Cow position: chr22:13766647-13766948 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 227
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 37, 6

Conread position: 497-755
Cow position: chr22:44366781-44366534 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 184
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 223, 48

Conread position: 500-772
Cow position: chr22:11807415-11807150 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 196
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 45, 105

Conread position: 550-785
Cow position: chr22:15310563-15310336 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 168
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 211, 61

Conread position: 558-776
Cow position: chr22:45014736-45014936 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 573-772
Cow position: chr22:23752321-23752117 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 64, 29

Conread position: 603-772
Cow position: chr22:44478158-44478333 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 142
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 38, 131

Conread position: 620-772
Cow position: chr22:1323582-1323741 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 95

Conread position: 620-772
Cow position: chr22:32283252-32283091 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 129
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 16, 117

Conread position: 629-784
Cow position: chr22:5313725-5313891 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 632-772
Cow position: chr22:2563307-2563164 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 99

Conread position: 639-772
Cow position: chr22:23509049-23508912 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 8

Show alignments to all cow chromosomes.